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[190535_at] ser/thr protein kinase

Description F22F1.2 /REP_DB=WormBase Gene ID /WP=CE04444 /TR=Q19742 /GB=AAA83281.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster 6grp_total > 09      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 94.4
(3)
A 		70.2
(1.2)
A 		66.4
(0.9)
A 		13.9
(-3)
A 		81
B 64
(0.6)
A 		57.9
(-0.4)
A 		79.2
(3)
A 		41.2
(-3)
A 		38
C 43.5
(-1)
A 		86.5
(3)
A 		44.2
(-0.9)
A 		21.6
(-3)
A 		65
avr 67.3
(2.5) 		71.5
(3) 		63.3
(1.9) 		25.6
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 81.1
(3)
A 		44.1
(-0.5)
A 		17.2
(-3)
A 		63.9
(1.4)
A 		38.8
(-1)
A 		30.8
(-1.7)
A 		64
B 73.6
(3)
A 		31.9
(-2.2)
A 		33.1
(-2.1)
A 		72.8
(2.9)
A 		25.6
(-3)
A 		31.1
(-2.3)
A 		48
C 94.9
(2.6)
A 		77.3
(1.4)
A 		101.1
(3)
A 		63.6
(0.4)
A 		64.7
(0.5)
A 		13.4
(-3)
A 		88
avr 83.2
(3) 		51.1
(-0.3) 		50.5
(-0.4) 		66.8
(1.3) 		43
(-1.2) 		25.1
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.4
(3)
A 		15.2
(-0.6)
A 		17.3
(-0.2)
A 		2
(-3)
A 		32
B 20.4
(3)
A 		14.3
(-0.2)
A 		18.4
(2)
A 		8.8
(-3)
A 		12
C 14.4
(0)
A 		24.9
(3)
A 		15.4
(0.3)
A 		3.6
(-3)
A 		21
avr 23.1
(3) 		18.1
(1.4) 		17
(1) 		4.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15
(2.4)
A 		15.7
(2.8)
A 		3.7
(-3)
A 		16.2
(3)
A 		11.7
(0.8)
A 		7.5
(-1.2)
A 		13
B 25.6
(3)
A 		10.6
(-2.1)
A 		8
(-3)
A 		19.3
(0.9)
A 		10.4
(-2.2)
A 		11.6
(-1.8)
A 		18
C 35.2
(3)
A 		23.6
(0.7)
A 		25.7
(1.1)
A 		12.8
(-1.4)
A 		20.9
(0.2)
A 		4.5
(-3)
A 		31
avr 25.3
(3) 		16.6
(0) 		12.5
(-1.4) 		16.1
(-0.2) 		14.3
(-0.8) 		7.9
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16639
Sequence Type Exemplar sequence
Representative Public ID F22F1.2 NCBI
Target Description F22F1.2 /REP_DB=WormBase Gene ID /WP=CE04444 /TR=Q19742 /GB=AAA83281.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076973 NCBI Caenorhabditis elegans F22F1.2 (F22F1.2) mRNA, complete cds. 11/11 None
SNAP00000034833 ENSEMBL cdna:SNAP chromosome:CEL140:X:8149614:8150656:-1 11/11 None
GENEFINDER00000034838 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8149614:8150656:-1 11/11 None
F22F1.2 ENSEMBL cdna:known chromosome:CEL140:X:8149614:8150656:-1 gene:F22F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8149612-8150655(-) 100.0 100.0
Public Domain and Genome References
Gene Title ser/thr protein kinase
Ensembl F22F1.2
Entrez Gene 184850 Entrez gene
SwissProt Q19742 EMBL-EBI
WormBase CE04444 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83281 Hypothetical protein F22F1.2 [Caenorhabditis elegans] ref|NP_509374.1| F22F1.2 [Caenorhabditis elegans] 1.0E-165
blast AAB00614 Hypothetical protein F39F10.2 [Caenorhabditis elegans] ref|NP_510731.1| F39F10.2 [Caenorhabditis elegans] 3.0E-94
blast AAB00613 Hypothetical protein F39F10.3 [Caenorhabditis elegans] ref|NP_510730.1| F39F10.3 [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-6
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-5
Sequence
Target Sequence 
>C. ELEGANS:190535_AT
ggacgacttgaccaacattgctcgccgaaacggtatcaagggattctcaaagtctactgg
atttcacatcctttggcagcttgtcaaaatcctccaagatgttcactcttttgggattgc
tcacggagacatcaaggctgacaacctaatgatttccggttcgaacaagaccttcatgct
gtcgcttgttgactttggtctgtcacgctccttcaaagaccacaatggcaaccgcactcc
cccaattccatttcccagcggctgcatcaatctcattcacacccccgctcgaaccgcaaa
tggcaaaccgcacatggaagcggaggaccttatgcaagttgcatacctcgcttgcatctg
tcgcaagcttgctccgtgggaagatatcgatggacacaaaatgactaaactgaagaaggc
tttcgccgaaaaaccaaagaaattccttggagaacaccaggatctcaagccgatcatcaa
gatcatcgccaagcaaaaacacggaaaggagccgaactacaaggaaatcatggatcttct
ccaagagatgctcacctcgtcgggtggaggtttcgctggtgattctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGACTTGACCAACATTGCTCGC 667 523 285 Antisense
TTCACATCCTTTGGCAGCTTGTCAA 260 685 347 Antisense
GATGTTCACTCTTTTGGGATTGCTC 61 411 382 Antisense
GAACAAGACCTTCATGCTGTCGCTT 183 353 447 Antisense
TGTCGCTTGTTGACTTTGGTCTGTC 534 557 464 Antisense
CACGCTCCTTCAAAGACCACAATGG 437 199 488 Antisense
ATTTCCCAGCGGCTGCATCAATCTC 643 15 534 Antisense
CCCGCTCGAACCGCAAATGGCAAAC 562 259 568 Antisense
GCAAGTTGCATACCTCGCTTGCATC 528 321 618 Antisense
TCGCAAGCTTGCTCCGTGGGAAGAT 531 599 645 Antisense
TGGAGGTTTCGCTGGTGATTCTCTC 605 549 849 Antisense
Sequence Source Affymetrix Proprietary Database