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[190528_at] C-lectin binding domain

Description F10F2.5 /REP_DB=WormBase Gene ID /WP=CE00950 /TR=Q19316 /GB=CAA84655.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster 6grp_total > 82      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 5.4
(-3)
A 		41.9
(1.6)
A 		52.8
(3)
A 		13.8
(-1.9)
A 		47
B 22.6
(1.8)
A 		13.3
(-1)
A 		26.5
(3)
A 		6.9
(-3)
A 		20
C 44
(-0.2)
A 		9
(-3)
A 		44.2
(-0.2)
A 		83.2
(3)
A 		74
avr 24
(-2.2) 		21.4
(-3) 		41.2
(3) 		34.6
(1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 8.9
(-3)
A 		34.5
(0.2)
A 		11.9
(-2.6)
A 		8.6
(-3)
A 		56.7
(3)
A 		13.6
(-2.4)
A 		48
B 18.4
(-3)
A 		29.8
(0.3)
A 		33.2
(1.3)
A 		19.7
(-2.6)
A 		38.9
(3)
A 		23.1
(-1.6)
A 		21
C 21.8
(-1.8)
A 		36
(-0.6)
A 		7.9
(-3)
A 		77.5
(3)
A 		29.6
(-1.1)
A 		12
(-2.6)
A 		70
avr 16.4
(-3) 		33.4
(1) 		17.7
(-2.6) 		35.3
(1.5) 		41.7
(3) 		16.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-3)
A 		9.1
(0.6)
A 		13.8
(3)
A 		2
(-3)
A 		12
B 7.2
(3)
A 		3.3
(-1.1)
A 		6.1
(1.8)
A 		1.5
(-3)
A 		6
C 14.6
(2.6)
A 		2.6
(-3)
A 		15.4
(3)
A 		14
(2.3)
A 		13
avr 7.9
(-0.4) 		5
(-3) 		11.8
(3) 		5.8
(-2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.6
(-3)
A 		12.3
(1.1)
A 		2.6
(-2.6)
A 		2.2
(-2.8)
A 		17.1
(3)
A 		3.3
(-2.3)
A 		16
B 6.4
(-2.3)
A 		9.9
(-0.3)
A 		8.1
(-1.4)
A 		5.2
(-3)
A 		15.8
(3)
A 		8.6
(-1.1)
A 		11
C 8.1
(-0.3)
A 		11
(1)
A 		2
(-3)
A 		15.6
(3)
A 		9.6
(0.4)
A 		4
(-2.1)
A 		14
avr 5.4
(-2.3) 		11.1
(1.1) 		4.2
(-3) 		7.7
(-0.9) 		14.2
(3) 		5.3
(-2.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7082
Sequence Type Exemplar sequence
Representative Public ID F10F2.5 NCBI
Target Description F10F2.5 /REP_DB=WormBase Gene ID /WP=CE00950 /TR=Q19316 /GB=CAA84655.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065546(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065546 NCBI Caenorhabditis elegans F10F2.5 (F10F2.5) mRNA, complete cds. 10/11 None
GENEFINDER00000027619 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4635294:4640525:1 10/11 None
SNAP00000027612 ENSEMBL cdna:SNAP chromosome:CEL140:III:4638457:4640525:1 10/11 None
F10F2.5 ENSEMBL cdna:known chromosome:CEL140:III:4638394:4640525:1 gene:F10F2.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4638393-4640525(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-lectin binding domain
Ensembl F10F2.5
Entrez Gene 175609 Entrez gene
SwissProt Q19316 EMBL-EBI
WormBase CE35855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84655 Hypothetical protein F10F2.5 [Caenorhabditis elegans] ref|NP_497947.2| F10F2.5 [Caenorhabditis elegans] 0.0
blast CAA84654 Hypothetical protein F10F2.8 [Caenorhabditis elegans] ref|NP_497946.1| F10F2.8 [Caenorhabditis elegans] 0.0
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190528_AT
atcataaacattttcagccgacgtgaaaacgaaggcctcgaagttatgtctgatgctcga
tatgctccaatttattgtgaacaaattgtgaaggggttatcttatacaaaatgtccggat
ggatttgtggaatactatcggaagaatgaaggaaaaacctggtgtcacaaatatgtatgg
gatgataccgcgaattacgataacgctgaacaaaaatgtcaacaattgggtgctcatttg
tcttcttttacgtccgatgaagaatttcaattcctaaatggtaggtgcgatatgattgct
aagagtgaacaacttccaaataccgattatattgaagtattgctgggtgcaagaagacga
aagcgttgtaatgatttatcaattgtgggtcgtggagggttctcttcggataaagaaagt
gaatgttctcgtcgtcgagtctttgaatggcttcacgatgttgctgagaatccaccaaat
tttctggatgcttattggccttctccgtatgaaccaaatcatgctcttgtggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATAAACATTTTCAGCCGACGTG 509 29 1045 Antisense
AGGCCTCGAAGTTATGTCTGATGCT 84 51 1077 Antisense
GTCTGATGCTCGATATGCTCCAATT 410 471 1092 Antisense
CAATTGGGTGCTCATTTGTCTTCTT 578 179 1267 Antisense
TTTGTCTTCTTTTACGTCCGATGAA 202 667 1281 Antisense
GTCGTGGAGGGTTCTCTTCGGATAA 299 473 1433 Antisense
GAAAGTGAATGTTCTCGTCGTCGAG 369 361 1459 Antisense
CGTCGTCGAGTCTTTGAATGGCTTC 60 245 1474 Antisense
GAATGGCTTCACGATGTTGCTGAGA 315 333 1489 Antisense
TTCTGGATGCTTATTGGCCTTCTCC 515 693 1526 Antisense
GAACCAAATCATGCTCTTGTGGATG 470 345 1555 Antisense
Sequence Source Affymetrix Proprietary Database