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[190526_at] Human P619 protein like

Description K11D2.1 /REP_DB=WormBase Gene ID /WP=CE12118 /TR=O62303 /GB=CAB05555.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human P619 protein like
Cluster 6grp_total > 17      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 61
(3)
A 		48.8
(1.3)
A 		16.7
(-3)
A 		51.8
(1.8)
A 		44
B 54.2
(1)
A 		21.4
(-1.9)
A 		76.9
(3)
A 		8.8
(-3)
A 		68
C 74.1
(3)
A 		68.7
(2.5)
A 		50.5
(0.7)
A 		11.8
(-3)
A 		62
avr 63.1
(3) 		46.3
(0.4) 		48
(0.7) 		24.1
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 115.5
(3)
P 		85.9
(1.2)
M 		74.3
(0.5)
P 		60.3
(-0.3)
A 		16
(-3)
A 		69.9
(0.3)
A 		100
B 138.5
(3)
P 		83.5
(-0.5)
A 		54.9
(-2.4)
A 		44.8
(-3)
A 		90.1
(-0.1)
A 		75.5
(-1)
P 		94
C 119.8
(3)
P 		84.4
(0.9)
A 		93.8
(1.4)
A 		62.3
(-0.4)
A 		19.3
(-3)
A 		89.9
(1.2)
P 		101
avr 124.6
(3) 		84.6
(0.1) 		74.3
(-0.6) 		55.8
(-2) 		41.8
(-3) 		78.4
(-0.3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.2
(3)
A 		10.6
(-0.9)
A 		4.4
(-3)
A 		7.6
(-1.9)
A 		18
B 17.3
(2.8)
A 		5.3
(-1.7)
A 		17.8
(3)
A 		1.9
(-3)
A 		16
C 24.5
(3)
A 		19.8
(1.7)
A 		17.6
(1.2)
A 		2
(-3)
A 		23
avr 21.3
(3) 		11.9
(-0.2) 		13.3
(0.3) 		3.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 21.3
(0.9)
P 		30.5
(3)
M 		16.2
(-0.3)
P 		15.3
(-0.5)
A 		4.8
(-3)
A 		17
(-0.2)
A 		26
B 48.2
(3)
P 		27.8
(-0.4)
A 		13.3
(-2.8)
A 		11.9
(-3)
A 		36.6
(1.1)
A 		28.2
(-0.3)
P 		36
C 44.4
(3)
P 		25.8
(0.1)
A 		23.9
(-0.2)
A 		12.5
(-2)
A 		6.2
(-3)
A 		30.1
(0.8)
P 		38
avr 38
(3) 		28
(0.6) 		17.8
(-1.9) 		13.2
(-3) 		15.9
(-2.3) 		25.1
(-0.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2094
Sequence Type Exemplar sequence
Representative Public ID K11D2.1 NCBI
Target Description K11D2.1 /REP_DB=WormBase Gene ID /WP=CE12118 /TR=O62303 /GB=CAB05555.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human P619 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060771 NCBI Caenorhabditis elegans K11D2.1 (K11D2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000019741 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12510591:12513036:1 11/11 None
SNAP00000019735 ENSEMBL cdna:SNAP chromosome:CEL140:I:12511965:12513036:1 11/11 None
K11D2.1 ENSEMBL cdna:known chromosome:CEL140:I:12512249:12512841:1 gene:K11D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12512179-12512772(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human P619 protein like
Ensembl K11D2.1
Entrez Gene 187290 Entrez gene
SwissProt O62303 EMBL-EBI
WormBase CE12118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05555 Hypothetical protein K11D2.1 [Caenorhabditis elegans] ref|NP_493172.1| K11D2.1 [Caenorhabditis elegans] 2.0E-88
blast CAB05555 Hypothetical protein K11D2.1 [Caenorhabditis elegans] ref|NP_493172.1| K11D2.1 [Caenorhabditis elegans] 4.0E-83
blast CAB05555 Hypothetical protein K11D2.1 [Caenorhabditis elegans] ref|NP_493172.1| K11D2.1 [Caenorhabditis elegans] 5.0E-83
blast CAE69318 Hypothetical protein CBG15383 [Caenorhabditis briggsae] 9.0E-48
blast CAE69318 Hypothetical protein CBG15383 [Caenorhabditis briggsae] 7.0E-47
blast CAE69318 Hypothetical protein CBG15383 [Caenorhabditis briggsae] 8.0E-47
blast XP_394080 PREDICTED: similar to CG6678-PA [Apis mellifera] 6.0E-19
blast XP_394080 PREDICTED: similar to CG6678-PA [Apis mellifera] 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:190526_AT
acattcctggacctgcatactgatttagatgttttgctggtagctacatcccgtgagata
tacgctgtcgaaagatctggaacaagttcggaaattgtgaagatcctggttgattctgtc
ggaatttcaccgaaaaagaacaatttagcaaataagatccaatttccatggcctgtgaga
attgtggaagctgctgctggtcacgactttctgatcttccgggatacaaccggcaacctc
ttctctatgggtaccggaactcgcggggagcttggagttggtctgatccgccgagtcgac
gagcccgtccatatcgagcaactcgtgggaattcgcattaaaaaggtggcttgtggcggt
tggcatacggtagcactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCCTGGACCTGCATACTGATT 46 105 79 Antisense
TGTTTTGCTGGTAGCTACATCCCGT 633 561 108 Antisense
GAAGATCCTGGTTGATTCTGTCGGA 671 337 177 Antisense
GATCCAATTTCCATGGCCTGTGAGA 619 415 234 Antisense
TTGTGGAAGCTGCTGCTGGTCACGA 214 709 260 Antisense
GACTTTCTGATCTTCCGGGATACAA 223 371 283 Antisense
CTCTTCTCTATGGGTACCGGAACTC 585 229 316 Antisense
ACCGGAACTCGCGGGGAGCTTGGAG 121 87 331 Antisense
GAGCTTGGAGTTGGTCTGATCCGCC 247 387 346 Antisense
GAGCAACTCGTGGGAATTCGCATTA 43 391 394 Antisense
GCGGTTGGCATACGGTAGCACTGAC 700 291 434 Antisense
Sequence Source Affymetrix Proprietary Database