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[190524_at] myosin heavy chain like

Description C17E4.2 /REP_DB=WormBase Gene ID /WP=CE08251 /TR=Q93228 /GB=CAB02745.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=myosin heavy chain like
Cluster 6grp_total > 45      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 160.9
(1.4)
A 		110.7
(-2.3)
A 		100.4
(-3)
A 		183.3
(3)
P 		83
B 216.3
(3)
P 		132.3
(-3)
A 		137.1
(-2.7)
A 		191.9
(1.3)
A 		84
C 181.8
(3)
P 		147.3
(-0.7)
A 		125.3
(-3)
A 		145.9
(-0.8)
A 		57
avr 186.3
(3) 		130.1
(-2.2) 		120.9
(-3) 		173.7
(1.8) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 184.6
(-0.1)
P 		141.2
(-1.9)
P 		262.4
(3)
P 		177
(-0.5)
M 		114.1
(-3)
A 		212.8
(1)
P 		148
B 230.7
(2.8)
P 		181
(0.7)
P 		171.3
(0.3)
P 		124.6
(-1.7)
A 		94.5
(-3)
A 		234.2
(3)
P 		140
C 172.5
(1.5)
P 		192.5
(3)
M 		177.4
(1.9)
P 		122.7
(-2.1)
M 		110.4
(-3)
A 		181.6
(2.2)
P 		82
avr 195.9
(2.2) 		171.6
(0.8) 		203.7
(2.7) 		141.4
(-1) 		106.3
(-3) 		209.5
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 58.6
(3)
A 		24
(-3)
A 		26.2
(-2.6)
A 		26.8
(-2.5)
P 		35
B 69
(3)
P 		32.7
(-2.9)
A 		31.8
(-3)
A 		40.9
(-1.5)
A 		37
C 60.2
(3)
P 		42.4
(-0)
A 		43.7
(0.2)
A 		24.6
(-3)
A 		36
avr 62.6
(3) 		33
(-2.6) 		33.9
(-2.4) 		30.8
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34
(-3)
P 		50.2
(1.2)
P 		57.2
(3)
P 		44.9
(-0.2)
M 		34.4
(-2.9)
A 		51.8
(1.6)
P 		23
B 80.3
(2.2)
P 		60.2
(0)
P 		41.6
(-2)
P 		33
(-3)
A 		38.4
(-2.4)
A 		87.3
(3)
P 		54
C 63.9
(3)
P 		58.7
(2.2)
M 		45.2
(0.1)
P 		24.7
(-3)
M 		35.7
(-1.3)
A 		60.8
(2.5)
P 		39
avr 59.4
(1.7) 		56.4
(1.1) 		48
(-0.4) 		34.2
(-3) 		36.2
(-2.6) 		66.6
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.985
Sequence Type Exemplar sequence
Representative Public ID C17E4.2 NCBI
Target Description C17E4.2 /REP_DB=WormBase Gene ID /WP=CE08251 /TR=Q93228 /GB=CAB02745.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=myosin heavy chain like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060100 NCBI Caenorhabditis elegans C17E4.2 (C17E4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000000963 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9420438:9424629:1 11/11 None
SNAP00000000947 ENSEMBL cdna:SNAP chromosome:CEL140:I:9422701:9424629:1 11/11 None
C17E4.2 ENSEMBL cdna:known chromosome:CEL140:I:9418738:9424778:1 gene:C17E4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9418668-9424560(+) 96.59 100.0
Public Domain and Genome References
Gene Title myosin heavy chain like
Ensembl C17E4.2
Entrez Gene 172766 Entrez gene
SwissProt Q93228 EMBL-EBI
WormBase CE08251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02745 Hypothetical protein C17E4.2 [Caenorhabditis elegans] ref|NP_492501.1| C17E4.2 [Caenorhabditis elegans] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 2.0E-26
blast AAB00143 putative 3.0E-22
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 2.0E-19
blast XP_635612 hypothetical protein DDB0188916 [Dictyostelium discoideum] gb|EAL62112.1| hypothetical protein DDB0188916 [Dictyostelium discoideum] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:190524_AT
cgagaaattgactgtggcacgtgagaatgtgaaatcggaagctgcaatgaaatcacactt
ggaacagaaatataaacgtttgacgctgaaaatgaaaaacttggaggctgccatgacgtt
gaagctcgaattagagagtttaaaagttttcgaggagacgaagaaaatacaagaaaatca
tagagcagcaaatgcacaaattaataaattggttgatgagaactcccaaatcgttcataa
attggaacagatcgtggcaaagaatattaatcttgaaaagaaatccgccgagctaaatga
gaagatgtctgccctcaataaaataaacatagaactgatgacatcagagagactccaatg
cgagaagagattaattgtacaggataagctggtcagtcaaatggaaaagaactctgagct
acaggatgaagtgaagtctctcaatttgagaatcgagaatctcggagttgaagagctgga
ggatgtgggagaggatccgagtgttgaacaaatccaagagagtgcatcagctgaagatca
cgaaacaagatctgaaagcagcacgagttcaactagttcattcgagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGAAATTGACTGTGGCACGTGAG 263 251 1854 Antisense
GAGGCTGCCATGACGTTGAAGCTCG 103 405 1957 Antisense
GATGAGAACTCCCAAATCGTTCATA 493 411 2068 Antisense
AAGAAATCCGCCGAGCTAAATGAGA 579 149 2131 Antisense
GAAGATGTCTGCCCTCAATAAAATA 659 337 2154 Antisense
GACATCAGAGAGACTCCAATGCGAG 325 369 2193 Antisense
GATGAAGTGAAGTCTCTCAATTTGA 290 405 2278 Antisense
GGAGAGGATCCGAGTGTTGAACAAA 195 519 2341 Antisense
AAATCCAAGAGAGTGCATCAGCTGA 496 117 2363 Antisense
GAAAGCAGCACGAGTTCAACTAGTT 474 357 2407 Antisense
GAGTTCAACTAGTTCATTCGAGCCA 132 399 2418 Antisense
Sequence Source Affymetrix Proprietary Database