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[190523_s_at] Zinc finger, C2H2 type

Description F53H10.2 /REP_DB=WormBase Gene ID /WP=CE11040 /TR=Q20733 /GB=CAB01216.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 10      6grp_total > 04      4grp_total > 38      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1549
1 2 3 4 range
A 2388.7
(3)
P 		1230.3
(-2.4)
P 		1090.2
(-3)
P 		1157.8
(-2.7)
P 		1299
B 2253.1
(3)
P 		1283.9
(-1.1)
P 		839.8
(-3)
P 		1514.3
(-0.1)
P 		1413
C 2157.9
(3)
P 		1181.1
(-2.6)
P 		1119.8
(-3)
P 		1209.5
(-2.5)
P 		1038
avr 2266.6
(3) 		1231.8
(-2) 		1016.6
(-3) 		1293.9
(-1.7) 		1250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 939
1 2 3 4 5 6 range
A 1760.9
(2.7)
P 		1799.9
(3)
P 		973.6
(-3)
P 		1290.9
(-0.7)
P 		1325.9
(-0.4)
P 		1173.3
(-1.5)
P 		826
B 1753.7
(3)
P 		1672
(2.5)
P 		1140.3
(-1.1)
P 		1325
(0.1)
P 		1171.1
(-0.9)
P 		861.2
(-3)
P 		893
C 1606.3
(3)
P 		1508.3
(2.1)
P 		1546.7
(2.4)
P 		1260.9
(-0.2)
P 		1209.6
(-0.7)
P 		966.1
(-3)
P 		640
avr 1707
(3) 		1660.1
(2.6) 		1220.2
(-1.1) 		1292.3
(-0.5) 		1235.5
(-1) 		1000.2
(-3) 		707
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 700
1 2 3 4 range
A 869.7
(3)
P 		267.1
(-2.2)
P 		285
(-2)
P 		169.5
(-3)
P 		700
B 718.5
(3)
P 		317.1
(-1.6)
P 		194.6
(-3)
P 		322.7
(-1.5)
P 		524
C 714.3
(3)
P 		339.6
(-1.4)
P 		390.3
(-0.8)
P 		203.9
(-3)
P 		510
avr 767.5
(3) 		307.9
(-2.1) 		290
(-2.4) 		232
(-3) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 324.6
(-1.4)
P 		640.1
(3)
P 		212
(-3)
P 		327.4
(-1.4)
P 		400.1
(-0.4)
P 		285.7
(-2)
P 		428
B 610.2
(3)
P 		556.5
(2)
P 		276.9
(-3)
P 		350.9
(-1.7)
P 		475.8
(0.6)
P 		321.1
(-2.2)
P 		333
C 595.4
(3)
P 		460.2
(0.6)
P 		393.7
(-0.5)
P 		253.6
(-3)
P 		391.4
(-0.6)
P 		323.4
(-1.8)
P 		342
avr 510.1
(2) 		552.3
(3) 		294.2
(-3) 		310.6
(-2.6) 		422.4
(-0) 		310.1
(-2.6) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190523_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14105
Sequence Type Exemplar sequence
Representative Public ID F53H10.2 NCBI
Target Description F53H10.2 /REP_DB=WormBase Gene ID /WP=CE11040 /TR=Q20733 /GB=CAB01216.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073368 NCBI Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA, complete cds. 11/11 None
SNAP00000041187 ENSEMBL cdna:SNAP chromosome:CEL140:V:10855469:10857941:-1 11/11 None
GENEFINDER00000041193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10855403:10857941:-1 11/11 None
F53H10.2 ENSEMBL cdna:known chromosome:CEL140:V:10855113:10868379:-1 gene:F53H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10855468-10868406(-) 99.79 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl F53H10.2
Entrez Gene 179505 Entrez gene
SwissProt Q20733 EMBL-EBI
WormBase CE32433 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01216 Hypothetical protein F53H10.2 [Caenorhabditis elegans] ref|NP_505769.2| F53H10.2 [Caenorhabditis elegans] 0.0
blast CAE64904 Hypothetical protein CBG09721 [Caenorhabditis briggsae] 0.0
blast XP_392354 PREDICTED: similar to CG16779-PA [Apis mellifera] 6.0E-24
blast XP_392354 PREDICTED: similar to CG16779-PA [Apis mellifera] 7.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 7.1E-10
Pfam IPR000949 EMBL-EBI ELM2 domain 5.5E-18
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 7.1E-10
Pfam IPR000949 EMBL-EBI ELM2 domain 5.5E-18
Sequence
Target Sequence 
>C. ELEGANS:190523_S_AT
ggactgtctccatcttcgaaagatctttttggaattcaaaaaaattatcagccaactgct
ccgcgtgctcatcatacaccttcagcatctgctagcaagaaaggtgcacagccaagtgct
gatggatttttccattgccgtctctgtgacaaatgctttgaaaaagttaaatctctgaat
gctcacatgaagtctcatgccatgaaggctcgtgcagagcaagaagcaaaagctcacgat
gctcaagttgctgcagcagccgccgctcaactaacaagtgctgtaggaaatgttgttggg
aatccggtggcaacatctccattgaattcatttgcaaatggccatctgggcatttcaatt
ccttcaacaatcggcaatttgactcctcagcagttgacaccccagcaattaaatctcaac
caacaattgcaaactcaattgaactcgttgagtaatcaaatgagcttgaactctccactc
actccacaacaacaattgcagcagtttactcaacaacatctcatggcaagagccatgcaa
cagaatctattccaaccagtgacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGTCTCCATCTTCGAAAGATC 110 525 2239 Antisense
TCATACACCTTCAGCATCTGCTAGC 630 619 2310 Antisense
TTCCATTGCCGTCTCTGTGACAAAT 93 701 2368 Antisense
GTCTCATGCCATGAAGGCTCGTGCA 552 467 2430 Antisense
GATGCTCAAGTTGCTGCAGCAGCCG 607 413 2476 Antisense
CGCCGCTCAACTAACAAGTGCTGTA 97 257 2499 Antisense
TGGGAATCCGGTGGCAACATCTCCA 602 553 2535 Antisense
TGGCCATCTGGGCATTTCAATTCCT 625 543 2577 Antisense
ACAATCGGCAATTTGACTCCTCAGC 688 111 2605 Antisense
GACACCCCAGCAATTAAATCTCAAC 513 367 2634 Antisense
AGAATCTATTCCAACCAGTGACCTC 646 75 2780 Antisense
Sequence Source Affymetrix Proprietary Database