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[190520_at]

Description R03E9.3 /REP_DB=WormBase Gene ID /WP=CE04786 /TR=Q21664 /GB=AAC48069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=anion exchange protein
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 81      6grp_total > 02      4grp_total > 16      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 241.2
(-1.3)
P 		269.7
(2.1)
P 		227
(-3)
P 		277
(3)
P 		50
B 244.6
(2.8)
P 		206.3
(-3)
P 		245.7
(3)
P 		227.2
(0.2)
P 		39
C 195.3
(-3)
P 		245.6
(0.3)
P 		258.4
(1.1)
P 		286.7
(3)
P 		91
avr 227
(-3) 		240.5
(-0.8) 		243.7
(-0.3) 		263.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 255
(0)
P 		240.2
(-0.4)
P 		246
(-0.2)
P 		233.1
(-0.6)
P 		367.5
(3)
P 		140.8
(-3)
P 		227
B 308.7
(0.8)
P 		385.5
(3)
P 		178.4
(-3)
P 		299.7
(0.5)
P 		284.9
(0.1)
P 		201.3
(-2.3)
P 		207
C 260.5
(-0.8)
P 		388
(3)
P 		202.3
(-2.5)
P 		310.2
(0.7)
P 		298.1
(0.3)
P 		185.7
(-3)
P 		202
avr 274.7
(0.7) 		337.9
(3) 		208.9
(-1.8) 		281
(0.9) 		316.8
(2.2) 		175.9
(-3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 87.8
(3)
P 		58.5
(-0.7)
P 		59.3
(-0.6)
P 		40.6
(-3)
P 		47
B 78
(3)
P 		51
(-2.5)
P 		56.9
(-1.3)
P 		48.4
(-3)
P 		30
C 64.6
(-0.7)
P 		70.6
(0.2)
P 		90.1
(3)
P 		48.3
(-3)
P 		42
avr 76.8
(3) 		60
(-0.3) 		68.8
(1.5) 		45.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 47
(-2)
P 		85.4
(1)
P 		53.6
(-1.5)
P 		59.1
(-1.1)
P 		110.9
(3)
P 		34.3
(-3)
P 		77
B 107.4
(1.5)
P 		128.3
(3)
P 		43.3
(-3)
P 		79.4
(-0.5)
P 		115.8
(2.1)
P 		75.1
(-0.8)
P 		85
C 96.6
(1)
P 		118.4
(3)
P 		51.5
(-3)
P 		62.4
(-2)
P 		96.5
(1)
P 		62.2
(-2)
P 		67
avr 83.7
(0.4) 		110.7
(3) 		49.5
(-3) 		67
(-1.3) 		107.7
(2.7) 		57.2
(-2.2) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16409
Sequence Type Exemplar sequence
Representative Public ID R03E9.3 NCBI
Target Description R03E9.3 /REP_DB=WormBase Gene ID /WP=CE04786 /TR=Q21664 /GB=AAC48069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=anion exchange protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029655(11), NM_001029656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029655 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-4) (abts-4) mRNA, complete cds. 11/11 None
NM_001029656 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-4) (abts-4) mRNA, complete cds. 11/11 None
GENEFINDER00000044148 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6747584:6759195:-1 11/11 None
SNAP00000044142 ENSEMBL cdna:SNAP chromosome:CEL140:X:6750991:6754301:-1 11/11 None
R03E9.3a ENSEMBL cdna:known chromosome:CEL140:X:6747276:6760420:-1 gene:R03E9.3 11/11 A 
R03E9.3b ENSEMBL cdna:known chromosome:CEL140:X:6747316:6760420:-1 gene:R03E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6751386-6760420(-) 100.0 100.0
Public Domain and Genome References
Ensembl R03E9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024826 Anion/Bicarbonate TranSporter family member (abts-4) [Caenorhabditis elegans] 0.0
blast AAZ32797 Anion/bicarbonate transporter family protein 4, isoform a [Caenorhabditis elegans] gb|AAX34418.1| anion transporter ABTS-4a [Caenorhabditis elegans] 0.0
blast AAX34430 anion transporter ABTS-4b [Caenorhabditis elegans] 0.0
blast NP_001024827 Anion/Bicarbonate TranSporter family member (abts-4) [Caenorhabditis elegans] 0.0
blast AAZ32798 Anion/bicarbonate transporter family protein 4, isoform b [Caenorhabditis elegans] 0.0
blast T28858 hypothetical protein R03E9.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024826.1 11 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782,812-834,839-856
NP_001024827.1 9 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782
R03E9.3a 11 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782,812-834,839-856
R03E9.3b 9 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782
GENEFINDER00000044148 10 149-171,191-213,234-256,320-337,357-374,404-426,447-469,519-541,571-593,598-615
SNAP00000044142 8 60-82,102-124,145-167,231-248,268-285,315-337,358-380,430-452
Sequence
Target Sequence 
>C. ELEGANS:190520_AT
caatcccgacctttcgacggaatatttgttatcccgtctgcccctcctactgctagtaca
cttacaattgctttaatttcttctatactgctttttgttttgatttttgttgaaactgaa
atccccgaacagatggcattgcgagagggtagaaaactgaaaaaaggaggtggccttcat
tgggacttgattgttgttggattttgcacactggttagttctgttcttggtcttccgtgg
atgtgccctgccgctgttcaatctctggctcatatcacttctttgactgaatacaagaaa
tctgcaccaggagtcccgtctagaatctcccatgtcattgaacaacgcgtttccggaatg
gtcacctacctcttgcttggcacatttgccattcttggacattttcttgcaattcctgct
gccacaattttcggtgtattcttctatcttggagttcgtaacttggagggaagtaagatg
atccttcgtctcaagttgtgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCCCGACCTTTCGACGGAATAT 324 179 1903 Antisense
AGGTGGCCTTCATTGGGACTTGATT 319 57 2070 Antisense
GCACACTGGTTAGTTCTGTTCTTGG 562 317 2108 Antisense
TGTTCTTGGTCTTCCGTGGATGTGC 560 561 2124 Antisense
TGTTCAATCTCTGGCTCATATCACT 47 563 2157 Antisense
CCAGGAGTCCCGTCTAGAATCTCCC 190 273 2209 Antisense
GAACAACGCGTTTCCGGAATGGTCA 333 351 2242 Antisense
ACATTTTCTTGCAATTCCTGCTGCC 599 105 2301 Antisense
TTCCTGCTGCCACAATTTTCGGTGT 483 697 2315 Antisense
TTTTCGGTGTATTCTTCTATCTTGG 304 677 2330 Antisense
TGATCCTTCGTCTCAAGTTGTGCTT 584 563 2381 Antisense
Sequence Source Affymetrix Proprietary Database