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[190519_at] anion exchange protein

Description F52D10.1 /REP_DB=WormBase Gene ID /WP=CE28338 /TR=Q20654 /GB=CAA91473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=anion exchange protein
Cluster 6grp_high1_10_10 > 13      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_total > 14      4grp_total > 06      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 284.1
(2.2)
P 		137.8
(-3)
P 		240.8
(0.7)
P 		305.8
(3)
P 		168
B 232.5
(-0.8)
P 		256.8
(0.8)
P 		197.9
(-3)
P 		290.9
(3)
P 		93
C 300.2
(3)
P 		203.9
(-3)
P 		243.8
(-0.5)
P 		298.2
(2.9)
P 		96
avr 272.3
(1.4) 		199.5
(-3) 		227.5
(-1.3) 		298.3
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 198.2
(0.8)
P 		240.4
(3)
P 		147.5
(-1.8)
P 		163.9
(-0.9)
P 		123.3
(-3)
P 		131.2
(-2.6)
P 		117
B 225.3
(3)
P 		195.7
(1.6)
P 		115.7
(-2.2)
M 		163.7
(0.1)
P 		110.6
(-2.4)
P 		98.8
(-3)
P 		127
C 240.4
(2)
P 		266.2
(3)
P 		220.9
(1.2)
P 		207.3
(0.6)
P 		118.2
(-3)
P 		138.1
(-2.2)
P 		148
avr 221.3
(2.3) 		234.1
(3) 		161.4
(-0.7) 		178.3
(0.1) 		117.4
(-3) 		122.7
(-2.7) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 103.5
(3)
P 		29.9
(-3)
P 		63
(-0.3)
P 		44.8
(-1.8)
P 		74
B 74.1
(3)
P 		63.4
(0.7)
P 		45.9
(-3)
P 		62
(0.4)
P 		28
C 99.4
(3)
P 		58.6
(-2)
P 		85
(1.2)
P 		50.3
(-3)
P 		49
avr 92.3
(3) 		50.6
(-3) 		64.6
(-1) 		52.4
(-2.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 36.5
(-2.5)
P 		85.5
(3)
P 		32.1
(-3)
P 		41.6
(-1.9)
P 		37.2
(-2.4)
P 		31.9
(-3)
P 		54
B 78.4
(3)
P 		65.2
(1.4)
P 		28.1
(-3)
M 		43.3
(-1.2)
P 		45
(-1)
P 		36.8
(-2)
P 		50
C 89.1
(3)
P 		81.2
(2.1)
P 		56.2
(-0.9)
P 		41.7
(-2.6)
P 		38.3
(-3)
P 		46.2
(-2.1)
P 		51
avr 68
(1.6) 		77.3
(3) 		38.8
(-2.9) 		42.2
(-2.4) 		40.2
(-2.7) 		38.3
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16327
Sequence Type Exemplar sequence
Representative Public ID F52D10.1 NCBI
Target Description F52D10.1 /REP_DB=WormBase Gene ID /WP=CE28338 /TR=Q20654 /GB=CAA91473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=anion exchange protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077535(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077535 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-2) (abts-2) mRNA, complete cds. 9/11 None
GENEFINDER00000034616 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11585600:11589578:1 10/11 None
F52D10.1 ENSEMBL cdna:known chromosome:CEL140:X:11585595:11589578:1 gene:F52D10.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034606 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11585599-11589578(+) 100.0 100.0
Public Domain and Genome References
Gene Title anion exchange protein
Gene Symbol abts-2
Ensembl F52D10.1
Entrez Gene 186108 Entrez gene
SwissProt Q20654 EMBL-EBI
WormBase CE28338 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6820 anion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5452 inorganic anion exchanger activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91473 Hypothetical protein F52D10.1 [Caenorhabditis elegans] ref|NP_509936.1| Anion/Bicarbonate TranSporter family member (abts-2) [Caenorhabditis elegans] 0.0
blast AAX34416 anion transporter ABTS-2 [Caenorhabditis elegans] 0.0
blast CAE70611 Hypothetical protein CBG17294 [Caenorhabditis briggsae] 0.0
blast CAE70611 Hypothetical protein CBG17294 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR003020 EMBL-EBI HCO3- transporter 9.4E-6
Pfam IPR003020 EMBL-EBI HCO3- transporter 8.1E-21
Pfam IPR003020 EMBL-EBI HCO3- transporter 8.7E-28
Pfam IPR003020 EMBL-EBI HCO3- transporter 5.1E-21
Pfam IPR003020 EMBL-EBI HCO3- transporter 6.7E-33
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.3E-24
Pfam IPR003020 EMBL-EBI HCO3- transporter 5.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509936.1 10 255-277,305-327,339-361,381-400,413-435,463-485,506-528,538-560,581-603,608-630
F52D10.1 10 255-277,305-327,339-361,381-400,413-435,463-485,506-528,538-560,581-603,608-630
GENEFINDER00000034616 9 261-283,296-318,345-367,379-401,429-451,472-494,549-571,591-613,618-640
Sequence
Target Sequence 
>C. ELEGANS:190519_AT
aagggttctgcacatcattgggatctgcttgttgttggagttttaaatattggattatca
attttcggattaccatggatgcacggagccctaccatcagcatatctacatttgaaggca
ctgagtgatgtggaagatcgtctacataacggatacatacagacagtaatcgttcacgtt
cgagaaactcgcttggcaacgttaattgcacacatcattatgataccaatctacttcttt
ttggttccacacatcacaaagttttttatcataatatttagtgatttagattttgcaagt
gttttcctgttcatggcattcagcagtttgactggaaacgagttttgggagcgaatcttg
ctaattttcaccgaacaacgtgcttatccaccaacacattacatccgccgtgttcctcaa
agagtggttcatcaattcacgatcattgaattcatccaacttgtaatccttgtggctatc
ggttttgcacagtatcactacgttgagatggtgtttcctattgttatcgcagctttcatt
ccattcagacacttcttccttccgttgttcatccgaaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGTTCTGCACATCATTGGGATC 143 159 1504 Antisense
CCCTACCATCAGCATATCTACATTT 36 259 1592 Antisense
CAATCTACTTCTTTTTGGTTCCACA 45 173 1730 Antisense
GCAAGTGTTTTCCTGTTCATGGCAT 425 321 1798 Antisense
GGAGCGAATCTTGCTAATTTTCACC 696 521 1851 Antisense
CAACGTGCTTATCCACCAACACATT 512 187 1879 Antisense
TCCGCCGTGTTCCTCAAAGAGTGGT 339 595 1907 Antisense
AATCCTTGTGGCTATCGGTTTTGCA 690 167 1968 Antisense
GTGTTTCCTATTGTTATCGCAGCTT 699 485 2014 Antisense
TTTCATTCCATTCAGACACTTCTTC 249 673 2037 Antisense
TCCTTCCGTTGTTCATCCGAAAGCA 340 591 2060 Antisense
Sequence Source Affymetrix Proprietary Database