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[190515_s_at]

Description T27E9.1 /REP_DB=WormBase Gene ID /WP=CE14263 /TR=O45865 /GB=CAB04874.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 10      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 08      6grp_total > 41      4grp_total > 0      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11253
1 2 3 4 range
A 21157.8
(-0.8)
P 		17173.5
(-3)
P 		24113.1
(0.9)
P 		27804.4
(3)
P 		10631
B 20655.4
(-1)
P 		18569.4
(-3)
P 		20048.3
(-1.6)
P 		24904.1
(3)
P 		6335
C 19073.5
(-2.3)
P 		17829.3
(-3)
P 		18674.4
(-2.5)
P 		28426.2
(3)
P 		10597
avr 20295.6
(-1.4) 		17857.4
(-3) 		20945.3
(-1) 		27044.9
(3) 		9188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7997
1 2 3 4 5 6 range
A 19443.7
(0.4)
P 		17473.9
(-2.8)
P 		18580.4
(-1)
P 		21076.8
(3)
P 		17364.8
(-3)
P 		18007
(-2)
P 		3712
B 20123.9
(1.3)
P 		22329.6
(3)
P 		20817.2
(1.9)
P 		16106.3
(-1.7)
P 		15584.5
(-2.1)
P 		14332.7
(-3)
P 		7997
C 19123.8
(0.4)
P 		18373.2
(-0.3)
P 		20332.1
(1.4)
P 		22190.9
(3)
P 		18182.6
(-0.5)
P 		15233.8
(-3)
P 		6957
avr 19563.8
(2.5) 		19392.2
(2.2) 		19909.9
(3) 		19791.3
(2.8) 		17044
(-1.2) 		15857.8
(-3) 		4052
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3976
1 2 3 4 range
A 7703.5
(3)
P 		3727.9
(-3)
P 		6303.6
(0.9)
P 		4070
(-2.5)
P 		3976
B 6586.9
(3)
P 		4586.2
(-3)
P 		4645.7
(-2.8)
P 		5307.1
(-0.8)
P 		2001
C 6313.9
(2.3)
P 		5126
(-1.8)
P 		6508.6
(3)
P 		4793.1
(-3)
P 		1716
avr 6868.1
(3) 		4480
(-3) 		5819.3
(0.4) 		4723.4
(-2.4) 		2388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3848
1 2 3 4 5 6 range
A 3584.3
(-3)
P 		6214.6
(3)
P 		4046.4
(-1.9)
P 		5345.6
(1)
P 		5239.9
(0.8)
P 		4384.1
(-1.2)
P 		2630
B 7002.1
(2.2)
P 		7432.6
(3)
P 		5055
(-1.5)
P 		4266
(-3)
P 		6331.8
(0.9)
P 		5344.6
(-1)
P 		3167
C 7088.4
(3)
P 		5606.2
(-0.4)
P 		5174.9
(-1.4)
P 		4462.6
(-3)
P 		5883.6
(0.2)
P 		5099.6
(-1.5)
P 		2626
avr 5891.6
(1.2) 		6417.8
(3) 		4758.8
(-2.8) 		4691.4
(-3) 		5818.4
(0.9) 		4942.8
(-2.1) 		1726
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190515_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6543
Sequence Type Exemplar sequence
Representative Public ID T27E9.1 NCBI
Target Description T27E9.1 /REP_DB=WormBase Gene ID /WP=CE14263 /TR=O45865 /GB=CAB04874.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027628(11), NM_001027629(9), NM_001027630(9), X76112(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027628 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-61) (tag-61) mRNA, complete cds. 11/11 None
NM_001027629 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-61) (tag-61) mRNA, complete cds. 9/11 None
NM_001027630 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-61) (tag-61) mRNA, complete cds. 9/11 None
X76112 NCBI C.elegans mRNA for ADP/ATP translocase. 10/11 None
SNAP00000014264 ENSEMBL cdna:SNAP chromosome:CEL140:III:13462747:13463855:1 11/11 None
GENEFINDER00000014274 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13462747:13463855:1 11/11 None
T27E9.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:13462301:13464013:1 gene:T27E9.1 11/11 None
T27E9.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:13462692:13464013:1 gene:T27E9.1 11/11 None
T27E9.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:13462697:13464467:1 gene:T27E9.1 9/11 None
T27E9.1c ENSEMBL cdna:known chromosome:CEL140:III:13462697:13464466:1 gene:T27E9.1 9/11 None
T27E9.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:13462699:13464002:1 gene:T27E9.1 9/11 None
T27E9.1b.3 ENSEMBL cdna:known chromosome:CEL140:III:13462699:13464173:1 gene:T27E9.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13462742-13463851(+) 100.0 100.0
Public Domain and Genome References
Ensembl T27E9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA53718 ADP/ATP translocase [Caenorhabditis elegans] 1.0E-161
blast CAB04874 Hypothetical protein T27E9.1a [Caenorhabditis elegans] ref|NP_001022799.1| Temporarily Assigned Gene name family member (tag-61) [Caenorhabditis elegans] 1.0E-160
blast CAE73690 Hypothetical protein CBG21201 [Caenorhabditis briggsae] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.9E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.1E-19
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.2E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022799.1 3 116-138,176-198,213-235
NP_001022801.1 1 116-138
CAA53718.1 3 116-138,176-198,213-235
T27E9.1a.2 3 116-138,176-198,213-235
T27E9.1a.1 3 116-138,176-198,213-235
T27E9.1c 1 116-138
SNAP00000014264 3 116-138,176-198,213-235
GENEFINDER00000014274 3 116-138,176-198,213-235
Sequence
Target Sequence 
>C. ELEGANS:190515_S_AT
ggcaatcttccttgagggactcgacaaaaagaaggacttctggaagttcttcgcaggaaa
cttggcttccggaggagctgctggagccacctccctctgcttcgtctacccactcgactt
tgcccgtacccgtcttgctgctgatattggaaaggccaacgaccgtgaattcaagggact
tgctgactgccttatcaagatcgtgaaatccgatggaccaatcggactctacagaggatt
cttcgtctccgtgcaaggaattatcatctaccgtgccgcatacttcggaatgttcgatac
cgccaagatggtcttcgcttctgatggacagaaactcaacttcttcgccgcttggggaat
tgctcaagttgtcacagtcggatctggaatcctttcctacccatgggacactgttcgtcg
tcgtatgatgatgcagtctggacgcaaggatatcctctacaaaaacaccctcgattgcgc
aaagaagatcatccaaaacgaaggaatgtccgctatgttcaagggagccctctccaacgt
cttccgtggaaccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATCTTCCTTGAGGGACTCGAC 29 535 312 Antisense
GAAACTTGGCTTCCGGAGGAGCTGC 504 355 368 Antisense
TACCCGTCTTGCTGCTGATATTGGA 310 649 438 Antisense
GGACTTGCTGACTGCCTTATCAAGA 429 525 487 Antisense
CTACAGAGGATTCTTCGTCTCCGTG 490 225 540 Antisense
ATGGTCTTCGCTTCTGATGGACAGA 402 51 619 Antisense
AGTCGGATCTGGAATCCTTTCCTAC 181 61 687 Antisense
CTTTCCTACCCATGGGACACTGTTC 586 221 703 Antisense
GGACACTGTTCGTCGTCGTATGATG 66 527 717 Antisense
GATATCCTCTACAAAAACACCCTCG 548 425 760 Antisense
TCCAACGTCTTCCGTGGAACCGGAG 588 587 844 Antisense
Sequence Source Affymetrix Proprietary Database