[Home] | [Total List]

[190508_at] glutathione peroxidase

Description R03G5.5 /REP_DB=WormBase Gene ID /WP=CE07402 /TR=Q21666 /GB=AAA96064.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 52      6grp_total > 62      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 268.3
(-0.4)
P 		482.2
(3)
P 		310
(0.3)
P 		103.7
(-3)
P 		379
B 298.5
(0.7)
P 		428.7
(3)
P 		364.1
(1.8)
P 		92.7
(-3)
P 		336
C 218.1
(-1.9)
P 		320.9
(-0)
P 		485.7
(3)
P 		161.3
(-3)
P 		324
avr 261.6
(-0.1) 		410.6
(3) 		386.6
(2.5) 		119.2
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 863
1 2 3 4 5 6 range
A 421.5
(-2.1)
P 		537.1
(-1.1)
P 		1024.1
(3)
P 		876.7
(1.8)
P 		524.4
(-1.2)
P 		314.2
(-3)
P 		710
B 372.5
(-3)
P 		724.2
(-0.3)
P 		1147.3
(3)
P 		909.6
(1.2)
P 		728.2
(-0.2)
P 		488.1
(-2.1)
P 		775
C 284.7
(-3)
P 		831.9
(3)
P 		814.4
(2.8)
P 		810.3
(2.8)
P 		443.5
(-1.3)
P 		537.3
(-0.2)
P 		547
avr 359.6
(-3) 		697.7
(0.2) 		995.3
(3) 		865.5
(1.8) 		565.4
(-1.1) 		446.5
(-2.2) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 97.7
(2.5)
P 		104.7
(3)
P 		81
(1.4)
P 		15.2
(-3)
P 		90
B 95.2
(2.3)
P 		105.9
(3)
P 		84.4
(1.5)
P 		19.8
(-3)
P 		86
C 72.2
(-1.1)
P 		92.3
(-0.3)
P 		169.3
(3)
P 		27.2
(-3)
P 		142
avr 88.4
(1.5) 		101
(2.3) 		111.6
(3) 		20.7
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 77.7
(-3)
P 		191
(1.7)
P 		223
(3)
P 		222.3
(3)
P 		158.2
(0.3)
P 		76.5
(-3)
P 		147
B 129.6
(-3)
P 		241
(1)
P 		278.6
(2.4)
P 		240.9
(1)
P 		295.9
(3)
P 		182
(-1.1)
P 		166
C 105.5
(-3)
P 		253.8
(3)
P 		207.3
(1.1)
P 		162.9
(-0.7)
P 		143.5
(-1.5)
P 		179.9
(0)
P 		148
avr 104.3
(-3) 		228.6
(2.7) 		236.3
(3) 		208.7
(1.7) 		199.2
(1.3) 		146.1
(-1.1) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16663
Sequence Type Exemplar sequence
Representative Public ID R03G5.5 NCBI
Target Description R03G5.5 /REP_DB=WormBase Gene ID /WP=CE07402 /TR=Q21666 /GB=AAA96064.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076918 NCBI Caenorhabditis elegans R03G5.5 (R03G5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000013523 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7798978:7799719:-1 10/11 None
R03G5.5 ENSEMBL cdna:known chromosome:CEL140:X:7798978:7799719:-1 gene:R03G5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013517 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7798976-7799718(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione peroxidase
Ensembl R03G5.5
Entrez Gene 187542 Entrez gene
SwissProt Q21666 EMBL-EBI
WormBase CE07402 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4602 glutathione peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96064 Hypothetical protein R03G5.5 [Caenorhabditis elegans] ref|NP_509319.1| R03G5.5 [Caenorhabditis elegans] 1.0E-109
blast AAA96064 Hypothetical protein R03G5.5 [Caenorhabditis elegans] ref|NP_509319.1| R03G5.5 [Caenorhabditis elegans] 1.0E-105
blast CAE70281 Hypothetical protein CBG16797 [Caenorhabditis briggsae] 3.0E-78
blast CAE70281 Hypothetical protein CBG16797 [Caenorhabditis briggsae] 4.0E-73
blast CAB03004 Hypothetical protein F26E4.12 [Caenorhabditis elegans] ref|NP_492598.1| F26E4.12 [Caenorhabditis elegans] sp|O02621|GPX1_CAEEL Probable glutathione peroxidase F26E4.12 6.0E-49
blast CAB03004 Hypothetical protein F26E4.12 [Caenorhabditis elegans] ref|NP_492598.1| F26E4.12 [Caenorhabditis elegans] sp|O02621|GPX1_CAEEL Probable glutathione peroxidase F26E4.12 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 5.0E-35
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 2.9E-42
Sequence
Target Sequence 
>C. ELEGANS:190508_AT
atttcatttctttatttcattgctgaaccagagattgaaaattgatatgtcgacggggac
aatttatgatttcagtgtaagagacaatagtggagatttggtttctttagacaaatacag
cggacttgttgtcatcatagtgaatgttgcatcatactgcggactgacaaattccaacta
caaagaactgaagtctctgaacgacaaatatcatttgcgtggactacgcgttgctgcttt
tccatgcaaccaatttggatttcaggcttgtgatattaacaagtttgtaaacgaaaaatt
tagttttgaaccagatctttatggaaaagtaacagtgaatggtgggccattgattggaga
agaagaacccctatggacatttttaaaaaaggaacagggtggaactcttttcgatgcaat
caaatggaattttacaaaatttctagtgaacagacaaggaaaagttgtggcgagatttgg
tccgtcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCATTTCTTTATTTCATTGCTG 42 17 48 Antisense
GTCGACGGGGACAATTTATGATTTC 578 473 96 Antisense
CAGCGGACTTGTTGTCATCATAGTG 401 203 165 Antisense
GTTGCATCATACTGCGGACTGACAA 198 439 193 Antisense
GCGGACTGACAAATTCCAACTACAA 111 293 206 Antisense
ATTTGCGTGGACTACGCGTTGCTGC 482 17 260 Antisense
CGCGTTGCTGCTTTTCCATGCAACC 447 255 274 Antisense
GCAACCAATTTGGATTTCAGGCTTG 267 319 293 Antisense
GAAGAAGAACCCCTATGGACATTTT 5 339 406 Antisense
GGAACAGGGTGGAACTCTTTTCGAT 378 505 438 Antisense
TGTGGCGAGATTTGGTCCGTCGACA 628 551 513 Antisense
Sequence Source Affymetrix Proprietary Database