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[190507_at] ring canal protein like

Description C53A5.9 /REP_DB=WormBase Gene ID /WP=CE08958 /TR=O17700 /GB=CAB03989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ring canal protein like
Cluster 6grp_total > 33      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 26
(1.2)
A 		35.4
(3)
A 		4
(-3)
A 		25.2
(1.1)
A 		31
B 15.9
(-0.2)
A 		24.1
(3)
A 		8.6
(-3)
A 		24.2
(3)
A 		16
C 22.7
(3)
A 		7
(-3)
A 		16.5
(0.6)
A 		17.5
(1)
A 		16
avr 21.5
(2.6) 		22.2
(3) 		9.7
(-3) 		22.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 89.2
(3)
P 		40.5
(-1.1)
P 		17.1
(-3)
A 		32.2
(-1.7)
A 		49.6
(-0.3)
A 		25.1
(-2.3)
A 		72
B 55.5
(0.7)
P 		52.2
(0.3)
P 		78.1
(3)
P 		19.9
(-3)
A 		49.4
(0)
P 		30.2
(-1.9)
A 		58
C 48.2
(0.2)
P 		67.9
(1.9)
P 		80.1
(3)
A 		45.5
(0)
A 		22.8
(-1.9)
A 		10.6
(-3)
A 		70
avr 64.3
(3) 		53.5
(1.5) 		58.4
(2.2) 		32.5
(-1.5) 		40.6
(-0.4) 		22
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.5
(3)
A 		7.7
(1.7)
A 		1.1
(-3)
A 		3.7
(-1.1)
A 		8
B 5.1
(1.8)
A 		5.9
(3)
A 		2
(-3)
A 		5.2
(1.9)
A 		4
C 7.5
(3)
A 		2
(-3)
A 		5.8
(1.1)
A 		3
(-1.9)
A 		6
avr 7.4
(3) 		5.2
(0) 		3
(-3) 		4
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 16.4
(3)
P 		14.4
(2.1)
P 		3.7
(-3)
A 		8.2
(-0.9)
A 		15
(2.3)
A 		6.1
(-1.9)
A 		13
B 19.3
(2.7)
P 		17.4
(1.9)
P 		19
(2.6)
P 		5.3
(-3)
A 		20.1
(3)
P 		11.3
(-0.6)
A 		15
C 17.9
(2)
P 		20.7
(3)
P 		20.4
(2.9)
A 		9.1
(-1)
A 		7.4
(-1.6)
A 		3.5
(-3)
A 		17
avr 17.9
(3) 		17.5
(2.8) 		14.4
(1.1) 		7.5
(-2.7) 		14.2
(1) 		7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13700
Sequence Type Exemplar sequence
Representative Public ID C53A5.9 NCBI
Target Description C53A5.9 /REP_DB=WormBase Gene ID /WP=CE08958 /TR=O17700 /GB=CAB03989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ring canal protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074204 NCBI Caenorhabditis elegans C53A5.9 (C53A5.9) mRNA, complete cds. 11/11 None
SNAP00000009292 ENSEMBL cdna:SNAP chromosome:CEL140:V:14559627:14561507:-1 11/11 None
GENEFINDER00000009302 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14557569:14561507:-1 11/11 None
C53A5.9 ENSEMBL cdna:known chromosome:CEL140:V:14559627:14561507:-1 gene:C53A5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14559626-14561507(-) 100.0 100.0
Public Domain and Genome References
Gene Title ring canal protein like
Ensembl C53A5.9
Entrez Gene 183739 Entrez gene
SwissProt O17700 EMBL-EBI
WormBase CE08958 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03989 Hypothetical protein C53A5.9 [Caenorhabditis elegans] ref|NP_506605.1| C53A5.9 [Caenorhabditis elegans] 0.0
blast CAB03988 Hypothetical protein C53A5.8 [Caenorhabditis elegans] ref|NP_506604.2| Serpentine Receptor, class G (gamma) family member (srg-47) [Caenorhabditis elegans] sp|O17699|SRG47_CAEEL Serpentine receptor class gamma-47 (Protein srg-47) 1.0E-148
blast CAB03987 Hypothetical protein C53A5.6 [Caenorhabditis elegans] ref|NP_506602.1| C53A5.6 [Caenorhabditis elegans] 1.0E-96
blast CAB03987 Hypothetical protein C53A5.6 [Caenorhabditis elegans] ref|NP_506602.1| C53A5.6 [Caenorhabditis elegans] 2.0E-96
blast CAB03991 Hypothetical protein C53A5.11 [Caenorhabditis elegans] ref|NP_506607.1| C53A5.11 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.6E-8
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 4.4E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-7
Pfam IPR006652 EMBL-EBI Kelch repeat 4.1E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 7.6E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 4.4E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-7
Pfam IPR006652 EMBL-EBI Kelch repeat 4.1E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 7.6E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009302 5 579-598,611-630,659-681,700-722,742-764
Sequence
Target Sequence 
>C. ELEGANS:190507_AT
aacggagcattgtatgttgtcggaggatacgattcaatttatttgagctcggttgaactg
tatgatttggaagagggaacatggaaaaatggaccgtcattgaataattgtcgtgcaaat
gcggcagttgttgcgtgctatggagagatatttgttctcggtggatttaatggaaagagc
aatgaagagtcgattgagaagatttcagcttcaggaaacgagtttgaaatttttggcgaa
atggaaggaggtagatccggatttggagcatgtgtgttccaaggaagaatctatattgct
ggtggatggagtaacacaagaaatacattgaaatcagtgagaagctacgacccctataca
aaaacctggagagatgaaccatcgatgaaaaacgctaggaaagcattcactcttcatgca
acaaatgaagcaatttacgcaattcgaggatatgatgaagaatctgctttactcgatcaa
attgaacgttttgatccaaagaaacttaaatggagtattgtgccttcaaagccacacgtc
ccaccaactagttataact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGAGCATTGTATGTTGTCGGAG 533 143 853 Antisense
TTATTTGAGCTCGGTTGAACTGTAT 688 677 891 Antisense
ATGCGGCAGTTGTTGCGTGCTATGG 256 43 971 Antisense
GATATTTGTTCTCGGTGGATTTAAT 154 427 999 Antisense
TCCGGATTTGGAGCATGTGTGTTCC 21 595 1108 Antisense
ATCAGTGAGAAGCTACGACCCCTAT 247 29 1185 Antisense
GACCCCTATACAAAAACCTGGAGAG 205 377 1201 Antisense
GGAAAGCATTCACTCTTCATGCAAC 574 527 1250 Antisense
GAAGAATCTGCTTTACTCGATCAAA 632 339 1309 Antisense
TATTGTGCCTTCAAAGCCACACGTC 267 665 1368 Antisense
CACGTCCCACCAACTAGTTATAACT 56 199 1387 Antisense
Sequence Source Affymetrix Proprietary Database