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[190505_at] Human NF45 protein like

Description R11H6.5 /REP_DB=WormBase Gene ID /WP=CE12778 /TR=O62349 /GB=CAB07644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human NF45 protein like
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 55      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 694
(3)
P 		586.4
(-1.9)
P 		612.2
(-0.7)
P 		562.2
(-3)
P 		132
B 739.4
(3)
P 		595.5
(-2.2)
P 		622.7
(-1.2)
P 		571.9
(-3)
P 		168
C 686
(3)
P 		524.2
(-1.7)
P 		594.8
(0.3)
P 		481.4
(-3)
P 		205
avr 706.5
(3) 		568.7
(-1.9) 		609.9
(-0.5) 		538.5
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 739
1 2 3 4 5 6 range
A 704.6
(-0.8)
P 		547.4
(-3)
P 		612
(-2.1)
P 		642
(-1.7)
P 		842.1
(1.1)
P 		976.3
(3)
P 		429
B 567.5
(-3)
P 		660.3
(-2.1)
P 		628.6
(-2.4)
P 		724.6
(-1.4)
P 		809.5
(-0.6)
P 		1171.6
(3)
P 		604
C 432.8
(-3)
P 		644.7
(-1)
P 		608.7
(-1.3)
P 		738.2
(-0.1)
P 		700.6
(-0.4)
P 		1058.2
(3)
P 		625
avr 568.3
(-3) 		617.5
(-2.4) 		616.4
(-2.4) 		701.6
(-1.4) 		784.1
(-0.4) 		1068.7
(3) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 252.7
(3)
P 		127.3
(-1.4)
P 		160
(-0.3)
P 		82.3
(-3)
P 		170
B 235.8
(3)
P 		147.1
(-1.7)
P 		144.3
(-1.8)
P 		121.9
(-3)
P 		114
C 227.1
(3)
P 		150.7
(-0.1)
P 		207.3
(2.2)
P 		81.2
(-3)
P 		146
avr 238.5
(3) 		141.7
(-1.1) 		170.5
(0.2) 		95.1
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 129.9
(-3)
P 		194.7
(0.1)
P 		133.3
(-2.8)
P 		162.8
(-1.4)
P 		254.1
(3)
P 		237.7
(2.2)
P 		124
B 197.5
(-2.1)
P 		219.8
(-1.6)
P 		152.6
(-3)
P 		191.9
(-2.2)
P 		328.9
(0.7)
P 		436.9
(3)
P 		284
C 160.4
(-2.7)
P 		196.7
(-1.6)
P 		154.9
(-2.8)
P 		148.4
(-3)
P 		226.7
(-0.7)
P 		354.2
(3)
P 		206
avr 162.6
(-2.5) 		203.7
(-1.3) 		146.9
(-3) 		167.7
(-2.4) 		269.9
(0.8) 		342.9
(3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12754
Sequence Type Exemplar sequence
Representative Public ID R11H6.5 NCBI
Target Description R11H6.5 /REP_DB=WormBase Gene ID /WP=CE12778 /TR=O62349 /GB=CAB07644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human NF45 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074213 NCBI Caenorhabditis elegans R11H6.5 (R11H6.5) mRNA, complete cds. 11/11 None
SNAP00000042452 ENSEMBL cdna:SNAP chromosome:CEL140:V:14613485:14614804:-1 11/11 None
GENEFINDER00000042453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14613485:14614811:-1 11/11 None
R11H6.5 ENSEMBL cdna:known chromosome:CEL140:V:14613326:14614811:-1 gene:R11H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14613484-14614741(-) 100.0 100.0
Public Domain and Genome References
Gene Title Human NF45 protein like
Ensembl R11H6.5
Entrez Gene 179965 Entrez gene
SwissProt O62349 EMBL-EBI
WormBase CE12778 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586953_AT similar to interleukin enhancer binding factor 2 cfa
CANINE_2:CFA.9877.1.S1_AT similar to interleukin enhancer binding factor 2 cfa
CANINE_2:CFAAFFX.26806.1.S1_S_AT similar to interleukin enhancer binding factor 2 cfa
DROSOPHILA_2:1627873_AT dm
DROSGENOME1:152968_AT dm
CHICKEN:GGA.9329.1.S1_AT interleukin enhancer binding factor 2, 45kDa gga
HG-U95AV2:36189_AT interleukin enhancer binding factor 2, 45kDa hs
PLASMODIUM_ANOPHELES:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HG-U133_PLUS_2:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HG-U133A:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HG-U133B:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HG-FOCUS:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HG-U133A_2:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
U133_X3P:200052_S_AT interleukin enhancer binding factor 2, 45kDa hs
HUGENEFL:U10323_AT interleukin enhancer binding factor 2, 45kDa hs
U133_X3P:G4758601_3P_X_AT interleukin enhancer binding factor 2, 45kDa hs
U133_X3P:G4758601_3P_AT interleukin enhancer binding factor 2, 45kDa hs
U133_X3P:G4758601_3P_A_AT interleukin enhancer binding factor 2, 45kDa hs
MG-U74AV2:93823_AT interleukin enhancer binding factor 2 mm
MOE430A:1417948_S_AT interleukin enhancer binding factor 2 mm
MOUSE430A_2:1417948_S_AT interleukin enhancer binding factor 2 mm
MOUSE430_2:1417948_S_AT interleukin enhancer binding factor 2 mm
MOE430A:1417949_AT interleukin enhancer binding factor 2 mm
MOUSE430A_2:1417949_AT interleukin enhancer binding factor 2 mm
MOUSE430_2:1417949_AT interleukin enhancer binding factor 2 mm
MG-U74CV2:171016_AT Interleukin enhancer binding factor 2, mRNA (cDNA clone MGC:30414 IMAGE:5012365) mm
MU19KSUBA:TC17874_AT Interleukin enhancer binding factor 2, mRNA (cDNA clone MGC:30414 IMAGE:5012365) mm
MU19KSUBA:TC24849_AT Interleukin enhancer binding factor 2, mRNA (cDNA clone MGC:30414 IMAGE:5012365) mm
MU19KSUBA:TC24849_G_AT Interleukin enhancer binding factor 2, mRNA (cDNA clone MGC:30414 IMAGE:5012365) mm
RG-U34B:RC_AA848402_AT similar to interleukin enhancer binding factor 2 rn
RAE230A:1371582_AT similar to interleukin enhancer binding factor 2 rn
RAT230_2:1371582_AT similar to interleukin enhancer binding factor 2 rn
Protein Similarities
Method ID Description E-Value
blast CAB07644 Hypothetical protein R11H6.5 [Caenorhabditis elegans] ref|NP_506614.1| R11H6.5 [Caenorhabditis elegans] 0.0
blast CAE60864 Hypothetical protein CBG04575 [Caenorhabditis briggsae] 1.0E-128
blast NP_080650 interleukin enhancer binding factor 2 [Mus musculus] ref|NP_004506.2| interleukin enhancer binding factor 2 [Homo sapiens] ref|XP_888131.1| PREDICTED: similar to interleukin enhancer binding factor 2 isoform 8 [Bos taurus] ref|XP_589228.2| PREDICTED: similar to interleukin enhancer binding factor 2 isoform 1 [Bos taurus] emb|CAI13612.1| interleukin enhancer binding factor 2, 45kDa [Homo sapiens] emb|CAI18796.1| interleukin enhancer binding factor 2, 45kDa [Homo sapiens] gb|AAH00382.1| Interleukin enhancer binding factor 2 [Homo sapiens] gb|AAH24718.1| Interleukin enhancer binding factor 2 [Mus musculus] ref|XP_537263.1| PREDICTED: similar to interleukin enhancer binding factor 2 isoform 1 [Canis familiaris] emb|CAH89466.1| hypothetical protein [Pongo pygmaeus] dbj|BAE33972.1| unnamed protein product [Mus musculus] dbj|BAB29021.1| unnamed protein product [Mus musculus] dbj|BAC37097.1| unnamed protein product [Mus musculus] gb|AAL59388.1| interleukin enhancer binding factor 2 [Mus musculus] gb|AAM45141.1| interleukin enhancer binding factor 2; NF45 [Homo sapiens] sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 (Nuclear factor of activated T-cells 45 kDa) sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 (Nuclear factor of activated T-cells 45 kDa) sp|Q5RFJ1|ILF2_PONPY Interleukin enhancer-binding factor 4.0E-48
Sequence
Target Sequence 
>C. ELEGANS:190505_AT
acctggttctcccaaatttccagcgagttgccaccagctttcattcaagaatggcaagca
cttgttcgagttttaaaggatacccgttcaagatacagcgacttccagcctctttctatt
tggacaatccagtaccttgcattctattgccttgcaaacggaccaaatcgccagaaagcc
tgtttggggactgctttccggcgattctttgaaatcattgctgctggtatctttcttcca
aaatcaccgtgtctgattgatccagtatcagccaactatcgcattggattcgacttgacg
cttcctcaaatggatacagtttgcatgggagctcaaactcttgtcagaatctttgccact
ggaaacgacggttatcgtgcgattcttggaacccatggaactgcagccgacctgacacaa
accatctcaacgtggaaaggaatcgaaattcgtccgagcatcgatgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGGTTCTCCCAAATTTCCAGCG 91 89 601 Antisense
TTGCCACCAGCTTTCATTCAAGAAT 607 701 628 Antisense
GATACCCGTTCAAGATACAGCGACT 234 423 679 Antisense
CAGCCTCTTTCTATTTGGACAATCC 669 201 706 Antisense
AATCCAGTACCTTGCATTCTATTGC 636 167 726 Antisense
TTGCTGCTGGTATCTTTCTTCCAAA 548 703 818 Antisense
GATCCAGTATCAGCCAACTATCGCA 38 417 859 Antisense
TCGACTTGACGCTTCCTCAAATGGA 228 601 890 Antisense
AACTCTTGTCAGAATCTTTGCCACT 365 141 936 Antisense
TTGGAACCCATGGAACTGCAGCCGA 191 705 986 Antisense
GAAATTCGTCCGAGCATCGATGCCT 591 363 1045 Antisense
Sequence Source Affymetrix Proprietary Database