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[190501_s_at] Lectin C-type domain /// Lectin C-type domain

Description Y102A5C.17 /REP_DB=WormBase Gene ID /WP=CE20389 /TR=Q9XX75 /GB=CAA20960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 93      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.7
(1.8)
A 		4.8
(-3)
A 		4.9
(-2.9)
A 		13.5
(3)
A 		9
B 6.6
(1.4)
A 		5
(-1.1)
A 		3.8
(-3)
A 		7.6
(3)
A 		4
C 6.2
(-2.6)
A 		5.9
(-3)
A 		8.3
(0)
A 		10.7
(3)
A 		5
avr 8.2
(0.3) 		5.2
(-3) 		5.7
(-2.4) 		10.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.4
(-1.2)
A 		6.5
(-1.1)
A 		4.3
(-2.6)
A 		12.7
(3)
A 		9.8
(1.1)
A 		3.7
(-3)
A 		9
B 5.6
(-2.7)
A 		21.3
(1.9)
A 		4.7
(-3)
A 		10.6
(-1.3)
A 		4.9
(-2.9)
A 		25
(3)
A 		20
C 6.8
(-2.5)
A 		13
(-1.2)
A 		5
(-2.9)
A 		12.7
(-1.2)
A 		32.8
(3)
A 		4.3
(-3)
A 		29
avr 6.3
(-2.1) 		13.6
(1.8) 		4.7
(-3) 		12
(0.9) 		15.8
(3) 		11
(0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.2
(3)
A 		1
(-3)
A 		1.3
(-2.4)
A 		2
(-1.1)
A 		3
B 2.1
(3)
A 		1.2
(-1.5)
A 		0.9
(-3)
A 		1.6
(0.5)
A 		1
C 2
(-1.5)
A 		1.7
(-3)
A 		2.9
(3)
A 		1.8
(-2.5)
A 		1
avr 2.8
(3) 		1.3
(-3) 		1.7
(-1.4) 		1.8
(-1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-2.2)
A 		2.3
(0.7)
A 		0.9
(-3)
A 		3.2
(3)
A 		2.9
(2.2)
A 		0.9
(-3)
A 		2
B 2
(-2.3)
A 		7.1
(1.4)
A 		1.1
(-3)
A 		2.8
(-1.8)
A 		2
(-2.3)
A 		9.3
(3)
A 		8
C 2.5
(-2.2)
A 		4
(-1.3)
A 		1.3
(-3)
A 		2.6
(-2.2)
A 		10.6
(3)
A 		1.4
(-2.9)
A 		9
avr 1.9
(-1.8) 		4.5
(2) 		1.1
(-3) 		2.9
(-0.4) 		5.2
(3) 		3.9
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190501_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14466
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.17 NCBI
Target Description Y102A5C.17 /REP_DB=WormBase Gene ID /WP=CE20389 /TR=Q9XX75 /GB=CAA20960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074878(11), NM_074885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074878 NCBI Caenorhabditis elegans Y102A5C.7 (Y102A5C.7) mRNA, complete cds. 11/11 None
NM_074885 NCBI Caenorhabditis elegans Y102A5C.17 (Y102A5C.17) mRNA, complete cds. 11/11 A 
SNAP00000003148 ENSEMBL cdna:SNAP chromosome:CEL140:V:16934584:16936133:1 9/11 None
SNAP00000003156 ENSEMBL cdna:SNAP chromosome:CEL140:V:16955269:16955926:1 10/11 None
GENEFINDER00000003196 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16934553:16938542:1 11/11 None
GENEFINDER00000003197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16954630:16960569:1 11/11 None
Y102A5C.7 ENSEMBL cdna:known chromosome:CEL140:V:16934584:16936133:1 gene:Y102A5C.7 11/11 None
Y102A5C.17 ENSEMBL cdna:known chromosome:CEL140:V:16954630:16955926:1 gene:Y102A5C.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16954629-16955926(+) 100.0 100.0
chrV:16934833-16936133(+) 95.05 95.05
Public Domain and Genome References
Gene Title Lectin C-type domain
Lectin C-type domain
Ensembl Y102A5C.7
Y102A5C.17
Entrez Gene 190832 Entrez gene
190841 Entrez gene
SwissProt Q9XX75 EMBL-EBI
Q9XX82 EMBL-EBI
WormBase CE20389 Wormbase
CE20380 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 1.0E-119
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 1.0E-114
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 2.0E-97
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 9.0E-96
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 7.0E-95
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 6.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507286.1 1 21-38
Y102A5C.17 1 21-38
GENEFINDER00000003197 1 21-38
Sequence
Target Sequence 
>C. ELEGANS:190501_S_AT
gaccacgttcaaatgcagattccatgtgttctgtgcagggagcagtcgtcagtggtattc
aaaatcaggaggagatagatttcatagttggttcctggatctctatgtatggttcaaccg
gttccatgtgggttggtgctcagagaactgccgcatgttggactttacaaggccagaccg
cagcctgctcaaaaaccacttcttttgaatggacagacaactcggcgaccggtaccgatg
gttatgtttggaatagtgcagtggagccgaacaatgtaggcggaatggaacaatgtctag
ttttgacctggacaggcctgatgtctgatcaaacatgcgctcgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACGTTCAAATGCAGATTCCAT 70 385 233 Antisense
GGGAGCAGTCGTCAGTGGTATTCAA 705 493 270 Antisense
GTTCCTGGATCTCTATGTATGGTTC 412 441 323 Antisense
ATGGTTCAACCGGTTCCATGTGGGT 478 49 341 Antisense
GGGTTGGTGCTCAGAGAACTGCCGC 69 497 362 Antisense
GAACTGCCGCATGTTGGACTTTACA 438 347 377 Antisense
GACTTTACAAGGCCAGACCGCAGCC 664 371 393 Antisense
GCCTGCTCAAAAACCACTTCTTTTG 392 281 415 Antisense
TGAATGGACAGACAACTCGGCGACC 498 573 438 Antisense
TGACCTGGACAGGCCTGATGTCTGA 161 569 536 Antisense
TGTCTGATCAAACATGCGCTCGTAC 587 557 554 Antisense
Sequence Source Affymetrix Proprietary Database