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[190500_at] Lectin C-type domain

Description Y102A5C.17 /REP_DB=WormBase Gene ID /WP=CE20389 /TR=Q9XX75 /GB=CAA20960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 09      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 15.6
(-2.8)
A 		29
(0.8)
A 		14.7
(-3)
A 		37.3
(3)
A 		23
B 26.6
(1.4)
A 		21.2
(-3)
A 		28.1
(2.6)
A 		28.6
(3)
A 		7
C 9.4
(-2.6)
A 		27.4
(3)
A 		16.1
(-0.5)
A 		8
(-3)
A 		19
avr 17.2
(-3) 		25.9
(3) 		19.6
(-1.3) 		24.6
(2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50.9
(3)
A 		13.1
(-3)
A 		30.5
(-0.2)
A 		14.8
(-2.7)
A 		13.3
(-3)
A 		24.4
(-1.2)
A 		38
B 21.2
(3)
A 		3.7
(-2.4)
A 		2.8
(-2.7)
A 		9.5
(-0.6)
A 		12.8
(0.4)
A 		1.7
(-3)
A 		20
C 34
(1.9)
A 		3.4
(-2.9)
A 		4.4
(-2.7)
A 		41.2
(3)
A 		2.6
(-3)
A 		22.5
(0.1)
A 		39
avr 35.4
(3) 		6.7
(-3) 		12.6
(-1.8) 		21.8
(0.2) 		9.6
(-2.4) 		16.2
(-1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.7
(1.6)
A 		6.3
(3)
A 		3.8
(-3)
A 		5.5
(1.1)
A 		3
B 8.5
(3)
A 		5.2
(-3)
A 		6.5
(-0.6)
A 		6.1
(-1.4)
A 		3
C 3.1
(-1.4)
A 		7.9
(3)
A 		5.6
(0.9)
A 		1.3
(-3)
A 		7
avr 5.8
(1.1) 		6.5
(3) 		5.3
(-0.3) 		4.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.4
(3)
A 		4.7
(-2)
A 		6.6
(-0)
A 		3.8
(-3)
A 		4
(-2.8)
A 		5.9
(-0.8)
A 		6
B 7.4
(3)
A 		1.2
(-2.5)
A 		0.7
(-2.9)
A 		2.5
(-1.3)
A 		5.2
(1.1)
A 		0.6
(-3)
A 		7
C 12.6
(3)
A 		1
(-2.9)
A 		1.1
(-2.8)
A 		8.3
(0.8)
A 		0.8
(-3)
A 		7.5
(0.4)
A 		12
avr 9.8
(3) 		2.3
(-3) 		2.8
(-2.6) 		4.9
(-0.9) 		3.3
(-2.2) 		4.7
(-1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14466
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.17 NCBI
Target Description Y102A5C.17 /REP_DB=WormBase Gene ID /WP=CE20389 /TR=Q9XX75 /GB=CAA20960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074885 NCBI Caenorhabditis elegans Y102A5C.17 (Y102A5C.17) mRNA, complete cds. 11/11 A 
GENEFINDER00000003197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16954630:16960569:1 11/11 None
Y102A5C.17 ENSEMBL cdna:known chromosome:CEL140:V:16954630:16955926:1 gene:Y102A5C.17 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003148 1/11 Cross Hyb Matching Probes None
SNAP00000003156 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16954629-16955926(+) 100.0 100.0
chrV:16934833-16936133(+) 95.05 95.05
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y102A5C.17
Entrez Gene 190841 Entrez gene
SwissProt Q9XX75 EMBL-EBI
WormBase CE20389 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 1.0E-119
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 1.0E-114
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 9.0E-96
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 6.0E-91
blast CAA20959 Hypothetical protein Y102A5C.16 [Caenorhabditis elegans] ref|NP_507288.2| Y102A5C.16 [Caenorhabditis elegans] 3.0E-82
blast CAA20959 Hypothetical protein Y102A5C.16 [Caenorhabditis elegans] ref|NP_507288.2| Y102A5C.16 [Caenorhabditis elegans] 7.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507286.1 1 21-38
Y102A5C.17 1 21-38
GENEFINDER00000003197 1 21-38
Sequence
Target Sequence 
>C. ELEGANS:190500_AT
ggtgattgtttcggcattgtcctttctgggaaaaatccacgcaaagacaggatcaaattg
agatcgtcctatatgatttgtgtctgcttttttgtacttatttctgccgttaactcttgt
attccaactcagcaagtggaaattccgtgtccaacagactgggagcaattcgaacgacct
agtgggacatggtgcattagggtgtttgttggatctggaccacgttcaaatgcagattcc
atgtgttctgtgcagggagcagtcgtcagtggtattcaaaatcaggaggagatagatttc
atagttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGATTGTTTCGGCATTGTCCTTT 190 501 16 Antisense
TTTCGGCATTGTCCTTTCTGGGAAA 265 671 24 Antisense
TTCTGGGAAAAATCCACGCAAAGAC 644 693 39 Antisense
GACAGGATCAAATTGAGATCGTCCT 346 369 61 Antisense
GATCGTCCTATATGATTTGTGTCTG 537 417 77 Antisense
TTTGTGTCTGCTTTTTTGTACTTAT 314 667 92 Antisense
TTGTACTTATTTCTGCCGTTAACTC 252 685 107 Antisense
TCTGCCGTTAACTCTTGTATTCCAA 277 609 118 Antisense
TAGGGTGTTTGTTGGATCTGGACCA 665 653 213 Antisense
TTGTTGGATCTGGACCACGTTCAAA 16 705 221 Antisense
AGGAGGAGATAGATTTCATAGTTGG 437 55 299 Antisense
Sequence Source Affymetrix Proprietary Database