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[190499_s_at] C-type lectin domain

Description C35D10.14 /REP_DB=WormBase Gene ID /WP=CE27828 /TR=Q18492 /GB=AAA62570.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 33      6grp_total > 51      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2568
1 2 3 4 range
A 2611.2
(3)
P 		2359.4
(2.4)
P 		2100.6
(1.8)
P 		158.8
(-3)
P 		2452
B 2698.2
(3)
P 		2346
(2.2)
P 		1922.1
(1.2)
P 		130.1
(-3)
P 		2568
C 2282.2
(2.5)
P 		2476
(3)
P 		1819.7
(1.3)
P 		183.9
(-3)
P 		2292
avr 2530.5
(3) 		2393.8
(2.7) 		1947.5
(1.5) 		157.6
(-3) 		2373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1305
1 2 3 4 5 6 range
A 1756.1
(2)
P 		1245.9
(-0.5)
P 		1945
(3)
P 		1716.4
(1.8)
P 		1398.7
(0.2)
P 		755.9
(-3)
P 		1189
B 1552.7
(1.8)
P 		1482.9
(1.3)
P 		1729.6
(3)
P 		1705
(2.8)
P 		1462.9
(1.1)
P 		873
(-3)
P 		857
C 1208.5
(-1.4)
P 		1638.4
(0.8)
P 		2061.3
(3)
P 		1950.8
(2.4)
P 		1137.9
(-1.8)
P 		906.9
(-3)
P 		1154
avr 1505.8
(0.7) 		1455.7
(0.4) 		1912
(3) 		1790.7
(2.3) 		1333.2
(-0.3) 		845.3
(-3) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 928
1 2 3 4 range
A 950.7
(3)
P 		512.2
(0.2)
P 		549.1
(0.4)
P 		23.2
(-3)
P 		928
B 860.4
(3)
P 		579.4
(1)
P 		445.4
(0)
P 		27.7
(-3)
P 		833
C 755.5
(3)
P 		711.9
(2.6)
P 		634.2
(2)
P 		31
(-3)
P 		725
avr 855.5
(3) 		601.2
(1.2) 		542.9
(0.7) 		27.3
(-3) 		828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 323.7
(0.2)
P 		443.1
(3)
P 		423.6
(2.5)
P 		435.3
(2.8)
P 		422.1
(2.5)
P 		184
(-3)
P 		259
B 540.3
(1.8)
P 		493.6
(0.8)
P 		420
(-0.9)
P 		451.6
(-0.2)
P 		594.4
(3)
P 		325.5
(-3)
P 		269
C 448
(0.9)
P 		499.9
(2.3)
P 		524.6
(3)
P 		392.3
(-0.6)
P 		368.2
(-1.2)
P 		303.6
(-3)
P 		221
avr 437.3
(1.8) 		478.9
(3) 		456.1
(2.3) 		426.4
(1.5) 		461.6
(2.5) 		271
(-3) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190499_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8076
Sequence Type Exemplar sequence
Representative Public ID C35D10.14 NCBI
Target Description C35D10.14 /REP_DB=WormBase Gene ID /WP=CE27828 /TR=Q18492 /GB=AAA62570.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065621 NCBI Caenorhabditis elegans C-type LECtin family member (clec-5) (clec-5) mRNA, complete cds. 11/11 None
SNAP00000029556 ENSEMBL cdna:SNAP chromosome:CEL140:III:4881913:4883195:-1 11/11 None
GENEFINDER00000029568 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4881913:4883527:-1 11/11 None
C35D10.14 ENSEMBL cdna:known chromosome:CEL140:III:4881913:4883536:-1 gene:C35D10.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4881912-4887403(-) 98.95 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Gene Symbol clec-5
Ensembl C35D10.14
Entrez Gene 175652 Entrez gene
SwissProt Q18492 EMBL-EBI
WormBase CE27828 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498022 C-type LECtin family member (clec-5) [Caenorhabditis elegans] gb|AAA62570.2| C-type lectin protein 5 [Caenorhabditis elegans] 0.0
blast NP_498022 C-type LECtin family member (clec-5) [Caenorhabditis elegans] gb|AAA62570.2| C-type lectin protein 5 [Caenorhabditis elegans] 1.0E-165
blast NP_498023 C-type LECtin family member (clec-6) [Caenorhabditis elegans] gb|AAK68224.1| C-type lectin protein 6 [Caenorhabditis elegans] 1.0E-158
blast CAE65367 Hypothetical protein CBG10312 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-14
Pfam IPR000859 EMBL-EBI CUB 1.1E-32
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-14
Pfam IPR000859 EMBL-EBI CUB 1.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498022.1 1 7-29
C35D10.14 1 7-29
GENEFINDER00000029568 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:190499_S_AT
tatatatcggtgcgtcgtggccgtcatcgtctgtattcaattggttggatggctctaact
ctgattacactaacattgatcaatcgtttggtcatggaggaaactgtgctcttttatcga
attatcaaccaagtgtagttccgatgggttattggtttagcttcccatgtactgccgctg
tgccttttatctgtaaaagatcagctggcatcaaatgttctggcactccaccaccagtaa
cagtaaccccggttccttccaatccatcattttgcaattctacacttctgattgcacctg
gtgtcattacatctccaaattatccgagcaactacgacaataatcaattctgctcttatc
atctatcaacactcggatcttatcgagtgcttctccatttttcagcgtttgccacagagg
taaactttgatctcgttgtggtctacaatggagaatcagctagtagttcacaaataggaa
ggtatagtggaagtttggacccgttcagtgtagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATATCGGTGCGTCGTGGCCGTC 448 659 1793 Antisense
GCCGTCATCGTCTGTATTCAATTGG 446 283 1812 Antisense
GGATGGCTCTAACTCTGATTACACT 474 515 1839 Antisense
ATTGGTTTAGCTTCCCATGTACTGC 532 3 1943 Antisense
GCTGGCATCAAATGTTCTGGCACTC 34 295 1996 Antisense
TCTACACTTCTGATTGCACCTGGTG 299 613 2071 Antisense
GCACCTGGTGTCATTACATCTCCAA 500 315 2086 Antisense
CTGCTCTTATCATCTATCAACACTC 451 237 2142 Antisense
GATCTTATCGAGTGCTTCTCCATTT 590 419 2168 Antisense
TCCATTTTTCAGCGTTTGCCACAGA 644 589 2186 Antisense
TTTGGACCCGTTCAGTGTAGTTTCA 173 663 2286 Antisense
Sequence Source Affymetrix Proprietary Database