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[190498_at] C-lectin binding domain

Description F10F2.6 /REP_DB=WormBase Gene ID /WP=CE00951 /TR=Q19314 /GB=CAA84653.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster 6grp_total > 58      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.2
(-3)
A 		4.5
(-2.1)
A 		5.1
(-1.7)
A 		11.9
(3)
A 		9
B 8
(3)
A 		4.4
(-2.1)
A 		3.8
(-3)
A 		3.9
(-2.9)
A 		4
C 3.9
(-0.5)
A 		5.9
(2.8)
A 		2.4
(-3)
A 		6
(3)
A 		4
avr 5
(-0.9) 		4.9
(-1.1) 		3.8
(-3) 		7.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 8.3
(3)
A 		3.8
(-1.7)
A 		2.6
(-3)
A 		4.5
(-1)
A 		4
(-1.5)
A 		7.3
(1.9)
A 		6
B 3.6
(-2.4)
A 		3.3
(-3)
A 		4.3
(-0.9)
A 		3.5
(-2.6)
A 		3.9
(-1.7)
A 		6.1
(3)
A 		3
C 3.3
(-2.1)
A 		4.3
(2.5)
A 		3.9
(0.7)
A 		3.1
(-3)
A 		3.5
(-1.2)
A 		4.4
(3)
A 		1
avr 5.1
(0.9) 		3.8
(-2.5) 		3.6
(-3) 		3.7
(-2.7) 		3.8
(-2.5) 		5.9
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-1.3)
A 		1
(-3)
A 		1.3
(-0.4)
A 		1.7
(3)
A 		1
B 2.5
(3)
A 		1.1
(-1.9)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		2
C 1.3
(0.3)
A 		1.7
(3)
A 		0.8
(-3)
A 		1
(-1.7)
A 		1
avr 1.7
(3) 		1.3
(-0.4) 		1
(-3) 		1.2
(-1.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.5
(1.5)
A 		1.4
(1)
A 		0.6
(-3)
A 		1.1
(-0.5)
A 		1.2
(-0)
A 		1.8
(3)
A 		1
B 1.3
(-1.3)
A 		1.1
(-2.1)
A 		1
(-2.6)
A 		0.9
(-3)
A 		1.6
(0)
A 		2.3
(3)
A 		1
C 1.2
(1)
A 		1.3
(1.7)
A 		1
(-0.3)
A 		0.6
(-3)
A 		1.1
(0.3)
A 		1.5
(3)
A 		1
avr 1.3
(-0.6) 		1.3
(-0.6) 		0.9
(-3) 		0.9
(-3) 		1.3
(-0.6) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6878
Sequence Type Exemplar sequence
Representative Public ID F10F2.6 NCBI
Target Description F10F2.6 /REP_DB=WormBase Gene ID /WP=CE00951 /TR=Q19314 /GB=CAA84653.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065544 NCBI Caenorhabditis elegans F10F2.6 (F10F2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000027618 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4628410:4634392:1 11/11 None
SNAP00000027610 ENSEMBL cdna:SNAP chromosome:CEL140:III:4633311:4634392:1 11/11 None
F10F2.6 ENSEMBL cdna:known chromosome:CEL140:III:4632371:4634392:1 gene:F10F2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4632370-4634392(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-lectin binding domain
Ensembl F10F2.6
Entrez Gene 184309 Entrez gene
SwissProt Q19314 EMBL-EBI
WormBase CE00951 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84653 Hypothetical protein F10F2.6 [Caenorhabditis elegans] ref|NP_497945.1| F10F2.6 [Caenorhabditis elegans] 0.0
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
blast CAA84654 Hypothetical protein F10F2.8 [Caenorhabditis elegans] ref|NP_497946.1| F10F2.8 [Caenorhabditis elegans] 0.0
blast CAA84653 Hypothetical protein F10F2.6 [Caenorhabditis elegans] ref|NP_497945.1| F10F2.6 [Caenorhabditis elegans] 1.0E-150
blast CAE67783 Hypothetical protein CBG13359 [Caenorhabditis briggsae] 1.0E-132
blast CAA84654 Hypothetical protein F10F2.8 [Caenorhabditis elegans] ref|NP_497946.1| F10F2.8 [Caenorhabditis elegans] 1.0E-126
blast CAA84726 Hypothetical protein T04A8.3 [Caenorhabditis elegans] ref|NP_497956.1| T04A8.3 [Caenorhabditis elegans] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:190498_AT
gtgcatgttctgatggattttcttcatattatcgtgctgcgttgggaatacaatggtgcc
acaagttggtttcaaacaaggaagttgtgtattcagaagctgagaaggaatgtgattcat
taggagctcatgtgtcgggattctcggatcagacagagttggattttatgcacaatatga
caatgaaaagcagtttaggacggcatcattattcaaatgtatatattggagcccgaagaa
gaccagaatgcattaaactcggtgtcagtgaccaaatccctggatttgatactgatgact
ccaaaccatgtgctcgtttccgagtgttttcttggcttcacggagttgccctgaatccac
ctgattttgcttccaactggatgaccgacaaggaaccaaactttgttgggaacgaagaac
aatgtattgttgtaatgacagggactcctccgcaatggcgctacaatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATGTTCTGATGGATTTTCTTC 608 479 923 Antisense
TTTTCTTCATATTATCGTGCTGCGT 134 677 940 Antisense
GCTCATGTGTCGGGATTCTCGGATC 179 301 1048 Antisense
GCAGTTTAGGACGGCATCATTATTC 154 313 1112 Antisense
CGGTGTCAGTGACCAAATCCCTGGA 119 245 1182 Antisense
GCTCGTTTCCGAGTGTTTTCTTGGC 163 283 1234 Antisense
TTTCTTGGCTTCACGGAGTTGCCCT 557 671 1250 Antisense
TGAATCCACCTGATTTTGCTTCCAA 680 573 1274 Antisense
GCTTCCAACTGGATGACCGACAAGG 694 297 1291 Antisense
TGTAATGACAGGGACTCCTCCGCAA 500 559 1353 Antisense
TCCTCCGCAATGGCGCTACAATGGC 486 593 1368 Antisense
Sequence Source Affymetrix Proprietary Database