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[190497_at] Lectin C-type domain

Description Y102A5C.16 /REP_DB=WormBase Gene ID /WP=CE20388 /TR=Q9XX76 /GB=CAA20959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 20      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.4
(-3)
A 		11.7
(3)
A 		5.6
(-2)
A 		6.8
(-1)
A 		7
B 7.1
(-0.5)
A 		6.9
(-0.7)
A 		10.9
(3)
A 		4.4
(-3)
A 		7
C 8.3
(-1.3)
A 		10.4
(-0.4)
A 		4.1
(-3)
A 		18.6
(3)
A 		15
avr 6.6
(-3) 		9.7
(2.6) 		6.9
(-2.5) 		9.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.4
(-1.1)
A 		3.1
(-2.7)
A 		11.3
(3)
A 		5.7
(-0.9)
A 		9.1
(1.5)
A 		2.7
(-3)
A 		9
B 5
(-2)
A 		5.5
(-1.1)
A 		6.3
(0.5)
A 		4.5
(-3)
A 		6.3
(0.5)
A 		7.6
(3)
A 		3
C 5.1
(-2)
A 		20.7
(3)
A 		6.8
(-1.5)
A 		10
(-0.4)
A 		2
(-3)
A 		3.7
(-2.5)
A 		19
avr 5.2
(-2.4) 		9.8
(3) 		8.1
(1) 		6.7
(-0.6) 		5.8
(-1.7) 		4.7
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(-0.6)
A 		2.5
(3)
A 		1.5
(-1)
A 		1
(-3)
A 		2
B 2.3
(2.3)
A 		1.7
(-0)
A 		2.5
(3)
A 		0.9
(-3)
A 		2
C 2.7
(1.6)
A 		3
(2.6)
A 		1.4
(-3)
A 		3.1
(3)
A 		2
avr 2.2
(1.3) 		2.4
(3) 		1.8
(-2.1) 		1.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.1)
A 		1.1
(-1.8)
A 		2.5
(2.4)
A 		1.4
(-0.9)
A 		2.7
(3)
A 		0.7
(-3)
A 		2
B 1.7
(-1.1)
A 		1.8
(-0.8)
A 		1.5
(-1.9)
A 		1.2
(-3)
A 		2.6
(2.3)
A 		2.8
(3)
A 		2
C 1.9
(-1.6)
A 		6.3
(3)
A 		1.7
(-1.8)
A 		2
(-1.5)
A 		0.6
(-3)
A 		1.2
(-2.4)
A 		6
avr 1.5
(-3) 		3.1
(3) 		1.9
(-1.5) 		1.5
(-3) 		2
(-1.1) 		1.6
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14688
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.16 NCBI
Target Description Y102A5C.16 /REP_DB=WormBase Gene ID /WP=CE20388 /TR=Q9XX76 /GB=CAA20959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074887(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074887 NCBI Caenorhabditis elegans Y102A5C.16 (Y102A5C.16) mRNA, complete cds. 10/11 None
Y102A5C.16 ENSEMBL cdna:known chromosome:CEL140:V:16959107:16960569:1 gene:Y102A5C.16 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003158 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003197 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16959106-16960569(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y102A5C.16
Entrez Gene 190840 Entrez gene
SwissProt Q9XX76 EMBL-EBI
WormBase CE36216 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20959 Hypothetical protein Y102A5C.16 [Caenorhabditis elegans] ref|NP_507288.2| Y102A5C.16 [Caenorhabditis elegans] 3.0E-98
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 2.0E-59
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 8.0E-55
Sequence
Target Sequence 
>C. ELEGANS:190497_AT
tttgtgtctgcctatttgtacttatttctgttgcccgttcatgtattccaactcagcaaa
ttgaaattccgtgcccgacaggctgggagcagttcgaacgacctagtgggacatggtgca
ttaaggtggttctagggcaaaatttggtttcgagaaaaaaacatattcaggtatttattg
gtcttggagataaagcaaacgcagtgagcatgtgtgctgctcagggagcagtagtcagcg
gaattcaagatcaaacggaaagggaattcatagttagttcatatgtttcattgaatggca
atactgttggagtgtggcttggcgctcaaaggacggccgcatgttggagttcaccattga
ccgcaacatgctcgaaaacgacatcgttcgaatggacggacggctcagccaccggcagcg
atgcatttatttggaatgttgcaactgagccgaacaacggaagcctgaacgaacattgtc
ttctcatgaactggcaaggcttcatgtctgaccaattttgcactataccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGTCTGCCTATTTGTACTTAT 175 667 17 Antisense
GTTGCCCGTTCATGTATTCCAACTC 304 439 46 Antisense
GCAAATTGAAATTCCGTGCCCGACA 277 317 72 Antisense
GTGCCCGACAGGCTGGGAGCAGTTC 232 477 87 Antisense
GTGGCTTGGCGCTCAAAGGACGGCC 501 487 330 Antisense
ATGTTGGAGTTCACCATTGACCGCA 346 47 357 Antisense
GACATCGTTCGAATGGACGGACGGC 679 367 396 Antisense
GCCACCGGCAGCGATGCATTTATTT 704 279 424 Antisense
GAACATTGTCTTCTCATGAACTGGC 381 351 487 Antisense
AACTGGCAAGGCTTCATGTCTGACC 158 143 505 Antisense
GTCTGACCAATTTTGCACTATACCC 625 471 522 Antisense
Sequence Source Affymetrix Proprietary Database