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[190496_s_at]

Description W09B6.1 /REP_DB=WormBase Gene ID /WP=CE14734 /TR=Q9GZI3 /GB=AAG00029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acetyl-CoA carboxylase
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 32      6grp_total > 42      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 864.8
(2)
P 		932.9
(3)
P 		710.6
(-0.2)
P 		512.9
(-3)
P 		420
B 877.2
(3)
P 		870.9
(2.9)
P 		739.3
(1)
P 		472.9
(-3)
P 		404
C 736.3
(1)
P 		889.1
(3)
P 		723.4
(0.8)
P 		427.7
(-3)
P 		461
avr 826.1
(2) 		897.6
(3) 		724.4
(0.6) 		471.2
(-3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1488
1 2 3 4 5 6 range
A 1213.6
(-1.6)
P 		1735.3
(3)
P 		1433.7
(0.3)
P 		1381.1
(-0.1)
P 		1053.9
(-3)
P 		1270.8
(-1.1)
P 		681
B 1211.8
(-0.2)
P 		1248
(0)
P 		1716.2
(3)
P 		1235.3
(-0)
P 		769.9
(-3)
P 		833
(-2.6)
P 		946
C 1764.5
(1.6)
P 		1135.6
(-0.9)
P 		2112.8
(3)
P 		1075.3
(-1.2)
P 		1282.9
(-0.3)
P 		624.8
(-3)
P 		1488
avr 1396.6
(0.5) 		1373
(0.3) 		1754.2
(3) 		1230.6
(-0.7) 		1035.6
(-2.1) 		909.5
(-3) 		845
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 314.9
(3)
P 		202.5
(0.2)
P 		185.8
(-0.2)
P 		75.1
(-3)
P 		240
B 279.7
(3)
P 		215.1
(0.8)
P 		171.3
(-0.6)
P 		100.8
(-3)
P 		179
C 243.7
(2.6)
P 		255.6
(3)
P 		252.1
(2.9)
P 		72.1
(-3)
P 		184
avr 279.4
(3) 		224.4
(1.3) 		203.1
(0.7) 		82.7
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 223.7
(-3)
P 		617.2
(3)
P 		312.2
(-1.7)
P 		350.3
(-1.1)
P 		318
(-1.6)
P 		309.4
(-1.7)
P 		394
B 421.6
(3)
P 		415.4
(2.7)
P 		416.8
(2.7)
P 		327.2
(-2.1)
P 		312.8
(-2.9)
P 		310.6
(-3)
P 		111
C 654
(3)
P 		346.5
(-1.1)
P 		537.7
(1.4)
P 		216.2
(-2.9)
P 		415.1
(-0.2)
P 		209.1
(-3)
P 		445
avr 433.1
(2.1) 		459.7
(3) 		422.2
(1.8) 		297.9
(-2.3) 		348.6
(-0.6) 		276.4
(-3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190496_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4278
Sequence Type Exemplar sequence
Representative Public ID W09B6.1 NCBI
Target Description W09B6.1 /REP_DB=WormBase Gene ID /WP=CE14734 /TR=Q9GZI3 /GB=AAG00029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acetyl-CoA carboxylase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027229 NCBI Caenorhabditis elegans W09B6.1a (W09B6.1) mRNA, complete cds. 11/11 None
SNAP00000001936 ENSEMBL cdna:SNAP chromosome:CEL140:II:1143942:1152381:1 11/11 None
GENEFINDER00000001940 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1143942:1152381:1 11/11 None
W09B6.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:1143914:1152677:1 gene:W09B6.1 11/11 None
W09B6.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:1143914:1152705:1 gene:W09B6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027230 2/11 Cross Hyb Matching Probes None
W09B6.1b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173500 2 1 NM_001027229 190496_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1143940-1152380(+) 100.0 100.0
Public Domain and Genome References
Ensembl W09B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00029 Hypothetical protein W09B6.1a [Caenorhabditis elegans] ref|NP_001022400.1| W09B6.1a [Caenorhabditis elegans] 0.0
blast CAE63310 Hypothetical protein CBG07699 [Caenorhabditis briggsae] 0.0
blast AAR12979 Hypothetical protein W09B6.1b [Caenorhabditis elegans] ref|NP_001022401.1| W09B6.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005482 EMBL-EBI Biotin carboxylase, C-terminal 1.8E-38
Pfam IPR005481 EMBL-EBI Carbamoyl-phosphate synthetase large chain, N-terminal 4.1E-23
Pfam IPR005479 EMBL-EBI Carbamoyl-phosphate synthase L chain, ATP-binding 1.7E-91
Pfam IPR000022 EMBL-EBI Carboxyl transferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190496_S_AT
gctgtgctggactcgaagatccgtccggagttcatccacctagtggccgatgagaaatct
cgtggaggaatcctcgaaccgaatgcagtcgtcggaatcaagttccgcaagccaatgatg
atggagatgatgaagcgatccgatccgacttactcgaagctttccagttccaccgagcca
gaagctcgtgagcagttagaggagagatatgaggagttgagcaagacctacaggaatgcg
tcggtcgagtttgcggatgctcacgatcgttggcagaggatgaagagcgtcggagtggtg
gagcatgtcacatcgctgacgaactctcggcgactcttctcggagttgctcaggaatgag
ctcgccaaagttggaatggcagagatctactcgtcagctcctcacacagtgaagccgtgc
ctcgcaacagcgatgacatgggttgaaacgaatctccgatcatatgtgcaaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGCTGGACTCGAAGATCCGTC 540 293 5551 Antisense
AGTTCATCCACCTAGTGGCCGATGA 536 63 5579 Antisense
GAATCCTCGAACCGAATGCAGTCGT 595 329 5618 Antisense
TGAAGCGATCCGATCCGACTTACTC 403 573 5681 Antisense
CGACTTACTCGAAGCTTTCCAGTTC 663 249 5696 Antisense
GTCGGTCGAGTTTGCGGATGCTCAC 86 473 5790 Antisense
GATGCTCACGATCGTTGGCAGAGGA 638 413 5806 Antisense
GAGCGTCGGAGTGGTGGAGCATGTC 369 385 5835 Antisense
GGAGCATGTCACATCGCTGACGAAC 377 521 5850 Antisense
TCAGCTCCTCACACAGTGAAGCCGT 307 625 5944 Antisense
GAATCTCCGATCATATGTGCAACCG 448 329 6000 Antisense
Sequence Source Affymetrix Proprietary Database