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[190495_at] Yeast ABC1 protein like

Description D2023.6 /REP_DB=WormBase Gene ID /WP=CE09076 /TR=O17735 /GB=CAB02876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast ABC1 protein like
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 400.5
(1.8)
P 		390.8
(1.4)
P 		428
(3)
P 		291.9
(-3)
P 		136
B 368.9
(-0.4)
P 		460.5
(3)
P 		330.3
(-1.8)
P 		299.2
(-3)
P 		161
C 390
(1.6)
P 		346.2
(0.1)
P 		431.9
(3)
P 		256.8
(-3)
P 		175
avr 386.5
(2.3) 		399.2
(3) 		396.7
(2.9) 		282.6
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 527.7
(-1.2)
P 		452.5
(-2)
P 		353.9
(-3)
P 		444
(-2)
P 		476.6
(-1.7)
P 		918
(3)
P 		564
B 404.2
(-1.7)
P 		444.7
(-1.3)
P 		272.6
(-3)
P 		606.3
(0.3)
P 		546.2
(-0.3)
P 		873.9
(3)
P 		601
C 284.8
(-3)
P 		353.3
(-2.1)
P 		534.5
(0.2)
P 		510.6
(-0.1)
P 		579
(0.8)
P 		751.5
(3)
P 		467
avr 405.6
(-2.8) 		416.8
(-2.6) 		387
(-3) 		520.3
(-1.3) 		533.9
(-1.1) 		847.8
(3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 145.8
(3)
P 		84.8
(-0.5)
P 		111.9
(1)
P 		42.7
(-3)
P 		103
B 117.6
(3)
P 		113.7
(2.6)
P 		76.5
(-1.6)
P 		63.8
(-3)
P 		54
C 129.1
(1.8)
P 		99.5
(0.1)
P 		150.5
(3)
P 		43.3
(-3)
P 		107
avr 130.8
(3) 		99.3
(0.7) 		113
(1.7) 		49.9
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 97.3
(-2.2)
P 		160.9
(0.4)
P 		77.1
(-3)
P 		112.6
(-1.5)
P 		143.8
(-0.3)
P 		223.5
(3)
P 		146
B 140.6
(-1.3)
P 		148
(-1.1)
P 		66.2
(-3)
P 		160.6
(-0.8)
P 		221.9
(0.6)
P 		325.9
(3)
P 		260
C 105.5
(-2.9)
P 		107.8
(-2.8)
P 		136
(-1.7)
P 		102.7
(-3)
P 		187.4
(0.4)
P 		251.6
(3)
P 		149
avr 114.5
(-2.3) 		138.9
(-1.4) 		93.1
(-3) 		125.3
(-1.9) 		184.4
(0.2) 		267
(3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14316
Sequence Type Exemplar sequence
Representative Public ID D2023.6 NCBI
Target Description D2023.6 /REP_DB=WormBase Gene ID /WP=CE09076 /TR=O17735 /GB=CAB02876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast ABC1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073579 NCBI Caenorhabditis elegans D2023.6 (D2023.6) mRNA, complete cds. 11/11 None
SNAP00000024929 ENSEMBL cdna:SNAP chromosome:CEL140:V:11829956:11831802:1 11/11 None
GENEFINDER00000024935 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11829956:11831802:1 11/11 None
D2023.6 ENSEMBL cdna:known chromosome:CEL140:V:11829914:11831945:1 gene:D2023.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11829955-11831802(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast ABC1 protein like
Ensembl D2023.6
Entrez Gene 179618 Entrez gene
SwissProt O17735 EMBL-EBI
WormBase CE09076 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265721_AT ABC1 family protein at
CANINE_2:CFAAFFX.26376.1.S1_S_AT similar to aarF domain containing kinase 1 cfa
DROSOPHILA_2:1624029_AT dm
DROSGENOME1:141773_AT dm
CHICKEN:GGAAFFX.6645.1.S1_AT similar to aarF domain containing kinase 1 gga
HU35KSUBA:RC_AA459412_AT aarF domain containing kinase 1 hs
U133_X3P:HS.15251.0.A2_3P_AT aarF domain containing kinase 1 hs
HG-U133_PLUS_2:227482_AT aarF domain containing kinase 1 hs
HG-U133B:227482_AT aarF domain containing kinase 1 hs
HG-U95B:53883_AT aarF domain containing kinase 1 hs
HG-U95E:87043_AT AarF domain containing kinase 1 hs
MOE430A:1423762_AT aarF domain containing kinase 1 mm
MOUSE430A_2:1423762_AT aarF domain containing kinase 1 mm
MOUSE430_2:1423762_AT aarF domain containing kinase 1 mm
MU19KSUBB:TC31889_AT AarF domain containing kinase 1 (Adck1), mRNA mm
RAE230A:1389599_AT aarF domain containing kinase 1 (predicted) rn
RAT230_2:1389599_AT aarF domain containing kinase 1 (predicted) rn
RG-U34C:RC_AI169386_AT AarF domain containing kinase 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02876 Hypothetical protein D2023.6 [Caenorhabditis elegans] ref|NP_505980.1| D2023.6 [Caenorhabditis elegans] 0.0
blast CAE75288 Hypothetical protein CBG23256 [Caenorhabditis briggsae] 0.0
blast CAG30956 hypothetical protein [Gallus gallus] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004147 EMBL-EBI ABC1 protein 6.8E-58
Sequence
Target Sequence 
>C. ELEGANS:190495_AT
aggatatttgcactcggatccgcaccctggaaatgtactgatcaacagcctaggaaatgg
aaaatatgaaattgtgctattggatcatggtttgtacttgaatatcagtgatcacattcg
taaactgtattccgatctttggctggcaattctgaagcctgatctccaagagatccgcaa
agttgcaagtcaaatgggagttggggaactctacggtctatttgcatgcatggtcactcg
acgttcttggaagtcggtcacaggtggaattggaaagtcgaaaatgaatgaaagtgaaaa
agatgagcttcgtatgtatgcttcgtcgttgatacctcaaatcagtgaagtactagcacg
aatgccacgagaaatgcttcttattttaaaaacgaatgatttgatgagaaacatcgagca
taaattaggagtttttggatcaagtgatggacatattgaaatgtcccgatgcgtcatccg
aagttcgcacgatcttgccattcgccgttcagatagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATATTTGCACTCGGATCCGCAC 648 55 939 Antisense
GATCCGCACCCTGGAAATGTACTGA 486 415 955 Antisense
AACTGTATTCCGATCTTTGGCTGGC 94 141 1061 Antisense
GGCAATTCTGAAGCCTGATCTCCAA 492 533 1083 Antisense
GGAACTCTACGGTCTATTTGCATGC 4 531 1143 Antisense
TTGCATGCATGGTCACTCGACGTTC 9 703 1160 Antisense
CGTTCTTGGAAGTCGGTCACAGGTG 394 243 1180 Antisense
TATGCTTCGTCGTTGATACCTCAAA 230 655 1255 Antisense
TATTGAAATGTCCCGATGCGTCATC 526 665 1392 Antisense
TCCGAAGTTCGCACGATCTTGCCAT 126 595 1415 Antisense
TTGCCATTCGCCGTTCAGATAGTCT 425 701 1433 Antisense
Sequence Source Affymetrix Proprietary Database