[Home] | [Total List]

[190494_s_at]

Description B0280.12 /REP_DB=WormBase Gene ID /WP=CE00819 /TR=SW:Q10914 /GB=AAA19090.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Glutamate receptor
Cluster 6grp_total > 80      4grp_total > 23      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 77.6
(3)
P 		5.1
(-3)
A 		18.9
(-1.9)
A 		31.4
(-0.8)
A 		73
B 50.1
(-2.1)
P 		47.9
(-2.3)
A 		40.7
(-3)
A 		101.7
(3)
M 		61
C 79
(3)
P 		41.5
(-1.7)
A 		30.8
(-3)
P 		72.7
(2.2)
P 		48
avr 68.9
(3) 		31.5
(-2.8) 		30.1
(-3) 		68.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 60
(3)
A 		39.5
(-2)
A 		40.6
(-1.7)
A 		58.5
(2.6)
A 		42.9
(-1.2)
A 		35.3
(-3)
A 		25
B 48
(-2.5)
A 		56.5
(-0.9)
M 		55.1
(-1.2)
A 		76.3
(3)
A 		58.5
(-0.5)
A 		45.7
(-3)
A 		31
C 43.1
(-2)
A 		55
(0.8)
A 		40.1
(-2.7)
P 		64.4
(3)
A 		38.9
(-3)
A 		39.5
(-2.9)
P 		26
avr 50.4
(-0.7) 		50.3
(-0.7) 		45.3
(-1.8) 		66.4
(3) 		46.8
(-1.5) 		40.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.3
(3)
P 		1.1
(-3)
A 		4.9
(-2.2)
A 		4.6
(-2.2)
A 		27
B 16
(0.2)
P 		11.8
(-1.8)
A 		9.4
(-3)
A 		21.7
(3)
M 		12
C 26.2
(3)
P 		11.9
(-2.5)
A 		10.7
(-3)
P 		12.3
(-2.4)
P 		16
avr 23.5
(3) 		8.3
(-3) 		8.3
(-3) 		12.9
(-1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.1
(-0.6)
A 		14.1
(2.3)
A 		8.8
(-2.8)
A 		14.8
(3)
A 		12.9
(1.2)
A 		8.6
(-3)
A 		6
B 16.7
(-1.1)
A 		18.8
(0.1)
M 		13.4
(-3)
A 		20.2
(0.9)
A 		23.8
(3)
A 		17
(-0.9)
A 		10
C 16
(2.3)
A 		16.8
(3)
A 		10.2
(-3)
P 		13
(-0.5)
A 		12.6
(-0.8)
A 		13.2
(-0.3)
P 		7
avr 14.6
(0.9) 		16.6
(3) 		10.8
(-3) 		16
(2.4) 		16.4
(2.8) 		12.9
(-0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7562
Sequence Type Exemplar sequence
Representative Public ID B0280.12 NCBI
Target Description B0280.12 /REP_DB=WormBase Gene ID /WP=CE00819 /TR=SW:Q10914 /GB=AAA19090.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Glutamate receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025942(10), NM_001025943(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025942 NCBI Caenorhabditis elegans GLutamate Receptor family (AMPA) family member (glr-2) (glr-2) mRNA, complete cds. 10/11 None
NM_001025943 NCBI Caenorhabditis elegans GLutamate Receptor family (AMPA) family member (glr-2) (glr-2) mRNA, complete cds. 10/11 None
B0280.12b ENSEMBL cdna:known chromosome:CEL140:III:7138607:7144756:-1 gene:B0280.12 10/11 A 
B0280.12a ENSEMBL cdna:known chromosome:CEL140:III:7138607:7144756:-1 gene:B0280.12 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7138604-7142988(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0280.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19090 Glutamate receptor family (ampa) protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021113.1| GLutamate Receptor family (AMPA) family member (glr-2) [Caenorhabditis elegans] 0.0
blast AAO61447 Glutamate receptor family (ampa) protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021114.1| GLutamate Receptor family (AMPA) family member (glr-2) [Caenorhabditis elegans] gb|AAK01094.2| non-NMDA ionotropic glutamate receptor subunit GLR-2 [Caenorhabditis elegans] sp|Q10914|GLR2_CAEEL Glutamate receptor 2 precursor 0.0
blast CAE70142 Hypothetical protein CBG16604 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001320 EMBL-EBI Ionotropic glutamate receptor 1.0E-126
Pfam IPR001320 EMBL-EBI Ionotropic glutamate receptor 1.0E-126
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 1.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021113.1 3 553-575,627-649,832-854
NP_001021114.1 3 622-644,696-718,901-923
B0280.12b 3 622-644,696-718,901-923
B0280.12a 3 553-575,627-649,832-854
Sequence
Target Sequence 
>C. ELEGANS:190494_S_AT
atgcatttttgctcgaagaaactacgaataattacgaatcaggacggagaccgtgcgata
caatgaaagtcggacaaaatttaaatacactgggttacggtattgcgacgaaaattggaa
atccattgaggtatgtcaaaaattctgtaagcctaagagtttcactaaacttggcaattc
tctatttatctgaaaaaggagaactcaaaaagttggaaaacaaatggtggtatgatcgtg
gtcaatgtgatacaggaacgtctgatggtggtactagtagtagtttgaatctgtcaaaag
ttgctggaatattctacattcttcttgctggaatggttctttcaatgtgtacagcacttg
ttgaattcttattcagaaagaataaagaaaatcgagagaaagagagaaatcgaatgagaa
gctctcgaccattgaaacccgggattttggcttcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATTTTTGCTCGAAGAAACTAC 552 29 1682 Antisense
GACGGAGACCGTGCGATACAATGAA 262 377 1724 Antisense
CACTGGGTTACGGTATTGCGACGAA 135 195 1769 Antisense
CTGTAAGCCTAAGAGTTTCACTAAA 520 59 1826 Antisense
AACTTGGCAATTCTCTATTTATCTG 590 137 1849 Antisense
ATGGTGGTATGATCGTGGTCAATGT 308 51 1905 Antisense
TACAGGAACGTCTGATGGTGGTACT 195 645 1932 Antisense
AATATTCTACATTCTTCTTGCTGGA 706 173 1989 Antisense
TACAGCACTTGTTGAATTCTTATTC 267 643 2031 Antisense
TGAGAAGCTCTCGACCATTGAAACC 351 569 2096 Antisense
GAAACCCGGGATTTTGGCTTCATGT 627 355 2115 Antisense
Sequence Source Affymetrix Proprietary Database