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[190493_at] C-lectin binding domain

Description F10F2.8 /REP_DB=WormBase Gene ID /WP=CE00953 /TR=Q19315 /GB=CAA84654.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster 6grp_total > 67      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.6
(-3)
A 		26.8
(3)
A 		5.4
(-2.5)
A 		5.8
(-2.4)
A 		23
B 16.6
(-1.9)
A 		35.1
(3)
A 		12.5
(-3)
A 		22.3
(-0.4)
A 		23
C 4.6
(-3)
A 		10.5
(3)
A 		8.8
(1.3)
A 		9.7
(2.2)
A 		6
avr 8.3
(-3) 		24.1
(3) 		8.9
(-2.8) 		12.6
(-1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 7.4
(-2.1)
A 		11.9
(-1.2)
A 		4.4
(-2.7)
A 		3.1
(-3)
A 		8.4
(-1.9)
A 		32.6
(3)
A 		30
B 10.1
(-2.2)
A 		4.1
(-3)
A 		7.6
(-2.5)
A 		4.1
(-3)
A 		5.1
(-2.9)
A 		47.5
(3)
A 		43
C 2.7
(-3)
A 		19.2
(-0.6)
A 		8.4
(-2.2)
A 		4.1
(-2.8)
A 		6.8
(-2.4)
A 		43.8
(3)
A 		41
avr 6.7
(-2.5) 		11.7
(-1.7) 		6.8
(-2.5) 		3.8
(-3) 		6.8
(-2.5) 		41.3
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.3
(-2.4)
A 		5.8
(3)
A 		1.4
(-2.3)
A 		0.8
(-3)
A 		5
B 5.3
(-0.5)
A 		8.7
(3)
A 		2.9
(-3)
A 		4.8
(-1)
A 		6
C 1.5
(-3)
A 		3
(2.6)
A 		3.1
(3)
A 		1.6
(-2.6)
A 		2
avr 2.7
(-2.5) 		5.8
(3) 		2.5
(-2.8) 		2.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		4.2
(-0.1)
A 		1
(-2.8)
A 		0.8
(-3)
A 		2.5
(-1.6)
A 		7.9
(3)
A 		7
B 3.5
(-2.1)
A 		1.4
(-2.9)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		2.1
(-2.6)
A 		17.7
(3)
A 		17
C 1
(-2.9)
A 		5.9
(-0.8)
A 		2.1
(-2.4)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		14.7
(3)
A 		14
avr 2
(-2.5) 		3.8
(-1.6) 		1.6
(-2.7) 		0.9
(-3) 		2.3
(-2.3) 		13.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6978
Sequence Type Exemplar sequence
Representative Public ID F10F2.8 NCBI
Target Description F10F2.8 /REP_DB=WormBase Gene ID /WP=CE00953 /TR=Q19315 /GB=CAA84654.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065545 NCBI Caenorhabditis elegans F10F2.8 (F10F2.8) mRNA, complete cds. 11/11 None
GENEFINDER00000027619 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4635294:4640525:1 10/11 None
SNAP00000027611 ENSEMBL cdna:SNAP chromosome:CEL140:III:4635375:4637454:1 11/11 None
F10F2.8 ENSEMBL cdna:known chromosome:CEL140:III:4635294:4637454:1 gene:F10F2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4635293-4637454(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-lectin binding domain
Ensembl F10F2.8
Entrez Gene 184311 Entrez gene
SwissProt Q19315 EMBL-EBI
WormBase CE00953 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84654 Hypothetical protein F10F2.8 [Caenorhabditis elegans] ref|NP_497946.1| F10F2.8 [Caenorhabditis elegans] 0.0
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
blast CAA84655 Hypothetical protein F10F2.5 [Caenorhabditis elegans] ref|NP_497947.2| F10F2.5 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190493_AT
aagtatgagtatgggccctgtcctgcaggatttttacaatatgatcgtactgaattagga
atacggtggtgccacaaactctattcggaattagaaacaacgtacgatgatgcagagaag
gaatgcttgtcattaggggctcatgtttccggtttttcggatttgaaggaaaaagacttc
atgcacgacatgataatggcctctccgatcaaaaataagacattcaatcgagtgtggatt
ggagctcagagaagaccggaatgcaatactttaggtgtcgaaggtaaaaccggtggattc
gatactgatgactccaaaccatgtgcccgttcccgcgtgttttattggcttcatggagtt
gccctgaatccaccagatttcattgagcactgggcggatcccaatgaaccgaattttctt
ggagataaagagaagtgtgttgttgtaatgacaggaagtgagtggactcattggaaattt
ggcataaacaaaaaaatcaatgatgtttcctgtggcagacgttatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTATGAGTATGGGCCCTGTCCTG 350 155 1183 Antisense
GGCCCTGTCCTGCAGGATTTTTACA 481 539 1196 Antisense
GTGCCACAAACTCTATTCGGAATTA 73 477 1251 Antisense
TCATTAGGGGCTCATGTTTCCGGTT 284 617 1312 Antisense
ACGACATGATAATGGCCTCTCCGAT 408 91 1367 Antisense
CCGGTGGATTCGATACTGATGACTC 19 263 1472 Antisense
CCGCGTGTTTTATTGGCTTCATGGA 535 261 1515 Antisense
TGCCCTGAATCCACCAGATTTCATT 562 583 1542 Antisense
TTTCATTGAGCACTGGGCGGATCCC 150 673 1560 Antisense
GGATCCCAATGAACCGAATTTTCTT 150 513 1578 Antisense
GTTTCCTGTGGCAGACGTTATCCAT 560 449 1687 Antisense
Sequence Source Affymetrix Proprietary Database