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[190491_at]

Description M04G12.4 /REP_DB=WormBase Gene ID /WP=CE12428 /TR=P92007 /GB=CAB03211.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 30      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1310
1 2 3 4 range
A 1711.7
(3)
P 		1009.1
(-0.4)
P 		835.6
(-1.2)
P 		472.8
(-3)
P 		1239
B 1782.5
(3)
P 		1031
(-0.6)
P 		793.9
(-1.7)
P 		526.1
(-3)
P 		1256
C 1628.2
(3)
P 		993.8
(-0.4)
P 		877.8
(-1)
P 		500.2
(-3)
P 		1128
avr 1707.5
(3) 		1011.3
(-0.5) 		835.8
(-1.3) 		499.7
(-3) 		1208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 989
1 2 3 4 5 6 range
A 1287.9
(2.7)
P 		1329.7
(3)
P 		710.6
(-1.2)
P 		604.9
(-1.9)
P 		532.7
(-2.4)
P 		440.8
(-3)
P 		889
B 921.2
(1.5)
P 		1096.7
(3)
P 		724.3
(-0.1)
P 		645.5
(-0.8)
P 		479.8
(-2.2)
P 		381.9
(-3)
P 		715
C 1371
(3)
P 		1080.7
(1.1)
P 		998.1
(0.6)
P 		715.4
(-1.2)
P 		498.5
(-2.6)
P 		430.3
(-3)
P 		941
avr 1193.4
(3) 		1169
(2.8) 		811
(0) 		655.3
(-1.2) 		503.7
(-2.3) 		417.7
(-3) 		776
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 554
1 2 3 4 range
A 623.2
(3)
P 		219.1
(-1.4)
P 		218.4
(-1.4)
P 		69.2
(-3)
P 		554
B 568.4
(3)
P 		254.6
(-1.1)
P 		184
(-2.1)
P 		112.1
(-3)
P 		456
C 539
(3)
P 		285.7
(-0.3)
P 		305.9
(-0.1)
P 		84.3
(-3)
P 		455
avr 576.9
(3) 		253.1
(-1) 		236.1
(-1.2) 		88.5
(-3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 237.4
(-0.9)
P 		472.9
(3)
P 		154.8
(-2.2)
P 		153.4
(-2.2)
P 		160.7
(-2.1)
P 		107.3
(-3)
P 		366
B 320.5
(1.8)
P 		365.1
(3)
P 		175.9
(-2.1)
P 		171
(-2.2)
P 		195
(-1.6)
P 		142.4
(-3)
P 		223
C 508.2
(3)
P 		329.7
(0.1)
P 		254
(-1.2)
P 		143.9
(-3)
P 		161.3
(-2.7)
P 		144
(-3)
P 		364
avr 355.4
(2.2) 		389.2
(3) 		194.9
(-1.5) 		156.1
(-2.4) 		172.3
(-2) 		131.2
(-3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14085
Sequence Type Exemplar sequence
Representative Public ID M04G12.4 NCBI
Target Description M04G12.4 /REP_DB=WormBase Gene ID /WP=CE12428 /TR=P92007 /GB=CAB03211.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182361(11), NM_073919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182361 NCBI Caenorhabditis elegans M04G12.4b (M04G12.4) mRNA, complete cds. 11/11 None
NM_073919 NCBI Caenorhabditis elegans M04G12.4a (M04G12.4) mRNA, complete cds. 11/11 None
SNAP00000041636 ENSEMBL cdna:SNAP chromosome:CEL140:V:13385714:13392076:-1 11/11 None
GENEFINDER00000041637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13385714:13392082:-1 11/11 None
M04G12.4b.3 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13393623:-1 gene:M04G12.4 11/11 None
M04G12.4b.2 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13392082:-1 gene:M04G12.4 11/11 A 
M04G12.4b.1 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13393985:-1 gene:M04G12.4 11/11 A 
M04G12.4a ENSEMBL cdna:known chromosome:CEL140:V:13389241:13393977:-1 gene:M04G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13389187-13392076(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04G12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03211 Hypothetical protein M04G12.4a [Caenorhabditis elegans] emb|CAD56587.2| Hypothetical protein M04G12.4a [Caenorhabditis elegans] ref|NP_506320.3| M04G12.4a [Caenorhabditis elegans] 0.0
blast CAD56592 Hypothetical protein M04G12.4b [Caenorhabditis elegans] ref|NP_872161.2| M04G12.4b [Caenorhabditis elegans] 0.0
blast CAE62607 Hypothetical protein CBG06725 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001054 EMBL-EBI Guanylate cyclase 1.1E-57
Pfam IPR001054 EMBL-EBI Guanylate cyclase 1.1E-57
Sequence
Target Sequence 
>C. ELEGANS:190491_AT
tcaccaaaaatttcacctccatcttcctcattctatggagccaactcttcagacttgtgc
tctccaggagaatattccaattccgcatacgaaccatacccgacaccaatgctcgagaac
acagaaagaacatcaacagaaactgcagtacttcaagatgcctatatctgcgaagattgt
gattttgtgacagtgtacaagggaaacatgaaacgtcatttaaacacgtgccatccgcag
cctgaatttaaaagtttgaaagaatgggatcaaaagttggaaggaatgcgagcttcgaat
cttggaatcagtggagatcggctacaggaacgattggcagctcataaagcaaactcctcg
agaggaaggaagccacgaaagaagaaggaaaacaacacagaagagagcgaatcaattgat
ttcaagaacattctcaactcggaaactggtgctcttcttgaatcgttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCAAAAATTTCACCTCCATCTT 199 625 1123 Antisense
CATCTTCCTCATTCTATGGAGCCAA 392 213 1142 Antisense
ATGGAGCCAACTCTTCAGACTTGTG 453 51 1157 Antisense
TCAGACTTGTGCTCTCCAGGAGAAT 485 623 1171 Antisense
TCCAATTCCGCATACGAACCATACC 275 587 1198 Antisense
ACCCGACACCAATGCTCGAGAACAC 286 87 1220 Antisense
GTCATTTAAACACGTGCCATCCGCA 636 467 1337 Antisense
GCGAGCTTCGAATCTTGGAATCAGT 32 289 1410 Antisense
GGCAGCTCATAAAGCAAACTCCTCG 440 535 1458 Antisense
GAACATTCTCAACTCGGAAACTGGT 16 351 1548 Antisense
ACTGGTGCTCTTCTTGAATCGTTAG 190 97 1567 Antisense
Sequence Source Affymetrix Proprietary Database