[Home] | [Total List]

[190489_at] Yeast DIE2 protein like

Description T24D1.4 /REP_DB=WormBase Gene ID /WP=CE14168 /TR=O02332 /GB=CAB03424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast DIE2 protein like
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 59      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 502.2
(2.1)
P 		542.2
(3)
P 		514.9
(2.4)
P 		274.9
(-3)
P 		267
B 379.2
(-3)
P 		494.9
(3)
P 		453.1
(0.8)
P 		381.1
(-2.9)
P 		116
C 558
(2.8)
P 		561
(2.9)
P 		568.9
(3)
P 		235
(-3)
P 		334
avr 479.8
(1.7) 		532.7
(3) 		512.3
(2.5) 		297
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 579.6
(3)
P 		363.4
(-3)
P 		384.3
(-2.4)
P 		475.8
(0.1)
P 		438.6
(-0.9)
P 		448.8
(-0.6)
P 		216
B 488
(-0.3)
P 		442.1
(-1.1)
P 		335.6
(-3)
P 		486.4
(-0.4)
P 		442.7
(-1.1)
P 		677.5
(3)
P 		342
C 402.1
(-1.5)
P 		491.2
(0.6)
P 		353.3
(-2.6)
P 		523.5
(1.4)
P 		337.3
(-3)
P 		591.6
(3)
P 		254
avr 489.9
(0.7) 		432.2
(-0.9) 		357.7
(-3) 		495.2
(0.8) 		406.2
(-1.6) 		572.6
(3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 182.9
(3)
P 		117.7
(0.3)
P 		134.6
(1)
P 		40.2
(-3)
P 		143
B 120.9
(2.8)
P 		122.2
(3)
P 		105
(0.5)
P 		81.2
(-3)
P 		41
C 184.7
(2.5)
P 		161.3
(1.6)
P 		198.3
(3)
P 		39.6
(-3)
P 		159
avr 162.8
(3) 		133.7
(1.4) 		146
(2.1) 		53.7
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 106.9
(-0.1)
P 		129.2
(2.6)
P 		83.7
(-3)
P 		120.7
(1.6)
P 		132.3
(3)
P 		109.3
(0.2)
P 		49
B 169.8
(0.1)
P 		147.2
(-0.7)
P 		81.5
(-3)
P 		128.8
(-1.3)
P 		179.9
(0.5)
P 		252.6
(3)
P 		171
C 149
(0.3)
P 		149.9
(0.3)
P 		89.9
(-3)
P 		105.3
(-2.1)
P 		109.1
(-1.9)
P 		198.1
(3)
P 		108
avr 141.9
(0.4) 		142.1
(0.4) 		85
(-3) 		118.3
(-1) 		140.4
(0.3) 		186.7
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.740
Sequence Type Exemplar sequence
Representative Public ID T24D1.4 NCBI
Target Description T24D1.4 /REP_DB=WormBase Gene ID /WP=CE14168 /TR=O02332 /GB=CAB03424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast DIE2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060233 NCBI Caenorhabditis elegans T24D1.4 (T24D1.4) mRNA, complete cds. 11/11 A 
SNAP00000027669 ENSEMBL cdna:SNAP chromosome:CEL140:I:9968620:9969895:-1 11/11 None
GENEFINDER00000027670 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9968620:9970092:-1 11/11 None
T24D1.4 ENSEMBL cdna:known chromosome:CEL140:I:9968458:9970092:-1 gene:T24D1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9968388-9970023(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast DIE2 protein like
Ensembl T24D1.4
Entrez Gene 172855 Entrez gene
SwissProt O02332 EMBL-EBI
WormBase CE14168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03424 Hypothetical protein T24D1.4 [Caenorhabditis elegans] ref|NP_492634.1| T24D1.4 [Caenorhabditis elegans] 0.0
blast CAE60251 Hypothetical protein CBG03825 [Caenorhabditis briggsae] 1.0E-159
blast CAE60251 Hypothetical protein CBG03825 [Caenorhabditis briggsae] 1.0E-157
blast CAE60251 Hypothetical protein CBG03825 [Caenorhabditis briggsae] 1.0E-141
blast AAH90948 ALG10 protein [Homo sapiens] 2.0E-43
blast AAH90948 ALG10 protein [Homo sapiens] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007006 EMBL-EBI DIE2/ALG10 family 1.0E-126
Pfam IPR007006 EMBL-EBI DIE2/ALG10 family 1.0E-126
Pfam IPR007006 EMBL-EBI DIE2/ALG10 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492634.1 8 21-43,132-154,161-183,187-204,217-239,259-281,294-316,357-379
T24D1.4 8 21-43,132-154,161-183,187-204,217-239,259-281,294-316,357-379
SNAP00000027669 7 69-88,98-120,155-177,197-219,231-253,294-316,339-361
GENEFINDER00000027670 9 21-43,116-138,145-167,171-188,201-223,243-265,278-300,341-363,386-408
Sequence
Target Sequence 
>C. ELEGANS:190489_AT
caccaaccaaagttccacgtggctcaatttttctacatggttgcattctgcgcggctcac
acttggactcaaatcatcccaaatctgttatctcaccttcgacacctaaccgacatgaaa
tcattagttctacaagcagttgtggcagttcttgtctactactattcttatgatcacccg
tatcttctcgctgataatcggcatttcacattctacatctggaggcgattcttggcaaat
cccacaatgcggacaactcttgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCAACCAAAGTTCCACGTGGCTC 705 107 769 Antisense
CACGTGGCTCAATTTTTCTACATGG 518 199 784 Antisense
TCTACATGGTTGCATTCTGCGCGGC 537 613 800 Antisense
GGCTCACACTTGGACTCAAATCATC 369 539 822 Antisense
TCATCCCAAATCTGTTATCTCACCT 177 619 842 Antisense
GTTGTGGCAGTTCTTGTCTACTACT 628 435 907 Antisense
TACTACTATTCTTATGATCACCCGT 577 645 925 Antisense
CCCGTATCTTCTCGCTGATAATCGG 596 259 945 Antisense
TAATCGGCATTTCACATTCTACATC 627 635 963 Antisense
GGAGGCGATTCTTGGCAAATCCCAC 549 515 989 Antisense
CCACAATGCGGACAACTCTTGCTCC 450 275 1010 Antisense
Sequence Source Affymetrix Proprietary Database