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[190487_at]

Description F42G9.1 /REP_DB=WormBase Gene ID /WP=CE07231 /TR=SW:P49595 /GB=AAA91358.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster 6grp_total > 46      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 221.2
(3)
P 		210.8
(2.7)
A 		183.2
(1.8)
M 		24.7
(-3)
A 		197
B 230.3
(3)
P 		159.7
(-0.9)
A 		199.9
(1.3)
A 		121.8
(-3)
A 		109
C 214.7
(2.3)
P 		149.2
(-0)
A 		233.2
(3)
P 		66.1
(-3)
A 		167
avr 222.1
(3) 		173.2
(1.1) 		205.4
(2.3) 		70.9
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 113.7
(-0.2)
A 		190.1
(3)
P 		110.7
(-0.3)
A 		79.9
(-1.6)
A 		46.7
(-3)
A 		179.8
(2.6)
P 		143
B 118.1
(-0.7)
P 		145.7
(0.4)
P 		133.6
(-0.1)
A 		122.4
(-0.5)
A 		64.8
(-3)
A 		205.8
(3)
P 		141
C 185.5
(3)
P 		164.7
(1.8)
A 		123.1
(-0.7)
A 		99.8
(-2)
A 		83.4
(-3)
A 		168.9
(2)
A 		102
avr 139.1
(0.7) 		166.8
(2.1) 		122.5
(-0.1) 		100.7
(-1.2) 		65
(-3) 		184.8
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 80.5
(3)
P 		45.8
(0.3)
A 		47.9
(0.5)
M 		3.6
(-3)
A 		77
B 73.4
(3)
P 		39.4
(-1.3)
A 		46.3
(-0.4)
A 		26
(-3)
A 		47
C 71.1
(2.1)
P 		42.9
(-0.3)
A 		81.3
(3)
P 		11.1
(-3)
A 		70
avr 75
(3) 		42.7
(-0.2) 		58.5
(1.4) 		13.6
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 21
(-2.2)
A 		67.6
(3)
P 		24.1
(-1.9)
A 		20.3
(-2.3)
A 		14.1
(-3)
A 		43.8
(0.3)
P 		54
B 41.1
(-1.2)
P 		48.5
(-0.4)
P 		32.5
(-2.3)
A 		32.4
(-2.3)
A 		26.3
(-3)
A 		76.7
(3)
P 		50
C 68.8
(3)
P 		50.2
(0.7)
A 		31.3
(-1.6)
A 		20.1
(-3)
A 		27
(-2.1)
A 		56.5
(1.5)
A 		49
avr 43.6
(0.5) 		55.4
(2.4) 		29.3
(-1.9) 		24.3
(-2.7) 		22.5
(-3) 		59
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8286
Sequence Type Exemplar sequence
Representative Public ID F42G9.1 NCBI
Target Description F42G9.1 /REP_DB=WormBase Gene ID /WP=CE07231 /TR=SW:P49595 /GB=AAA91358.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171075(11), NM_171076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171075 NCBI Caenorhabditis elegans F42G9.1a (F42G9.1) mRNA, complete cds. 11/11 None
NM_171076 NCBI Caenorhabditis elegans F42G9.1b (F42G9.1) mRNA, complete cds. 11/11 None
SNAP00000038497 ENSEMBL cdna:SNAP chromosome:CEL140:III:776270:785620:1 11/11 None
GENEFINDER00000038504 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:783720:786007:1 11/11 None
F42G9.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:783707:785620:1 gene:F42G9.1 11/11 None
F42G9.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:783709:786069:1 gene:F42G9.1 11/11 None
F42G9.1b ENSEMBL cdna:known chromosome:CEL140:III:783776:785620:1 gene:F42G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:783719-785620(+) 89.63 100.0
Public Domain and Genome References
Ensembl F42G9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91358 Hypothetical protein F42G9.1a [Caenorhabditis elegans] ref|NP_741086.1| F42G9.1a [Caenorhabditis elegans] sp|P49595|PP2C1_CAEEL Probable protein phosphatase 2C F42G9.1 (PP2C) 0.0
blast AAM29692 Hypothetical protein F42G9.1b [Caenorhabditis elegans] ref|NP_741087.1| F42G9.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.3E-15
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.8E-61
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 2.2E-8
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.8E-61
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.3E-15
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.8E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038504 1 523-545
Sequence
Target Sequence 
>C. ELEGANS:190487_AT
atggtagatggcagcctggctccattgcttttgggatccggtggagcagaggttcctggg
gaggattctggaacaactgcatgcgtttgcttggttggaaaggacaaggttatcgttgcg
aacgctggagattctcgtgccgtgctctgcagaaatggaaaggctgtggatttgtctgtg
gatcacaagccagaagatgaagtagagactaatagaattcatgctgctggaggacaaatc
gaagatggacgggtcaacggaggactgaatttgtcacgggctttcggtgatcacgcttat
aagaagaatcaagaattggggctcaaggagcagatgatcacagcactcccggacgtcaaa
atcgaagctctcacaccagaggacgagttcatcgtcgtggcttgtgatggaatctggaac
tcaatggaatctcaacaagtcgtcgattttgtccgtgaccttcttgcaaaaggatcttca
tgcgccgaagtgtgtgatgctctctgcgatgcatgccttgccgattcaactgacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTAGATGGCAGCCTGGCTCCAT 162 51 889 Antisense
GAACAACTGCATGCGTTTGCTTGGT 392 351 959 Antisense
CGAACGCTGGAGATTCTCGTGCCGT 4 253 1007 Antisense
GACTGAATTTGTCACGGGCTTTCGG 620 375 1151 Antisense
GGGCTTTCGGTGATCACGCTTATAA 579 491 1166 Antisense
GCACTCCCGGACGTCAAAATCGAAG 572 315 1231 Antisense
ACGAGTTCATCGTCGTGGCTTGTGA 368 93 1271 Antisense
CAAGTCGTCGATTTTGTCCGTGACC 63 185 1324 Antisense
ATGCGCCGAAGTGTGTGATGCTCTC 297 41 1368 Antisense
TGTGATGCTCTCTGCGATGCATGCC 470 555 1381 Antisense
CATGCCTTGCCGATTCAACTGACGG 71 211 1400 Antisense
Sequence Source Affymetrix Proprietary Database