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[190486_s_at]

Description F33H1.1 /REP_DB=WormBase Gene ID /WP=CE17763 /CHR=2 /FEA=Sanger Annotation /DEF=locus:daf-19 DNA binding transcription factor (HINXTON) SW:Q09555
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 727.1
(3)
P 		428.6
(-2.1)
P 		378.6
(-3)
P 		449.1
(-1.8)
P 		349
B 731.5
(3)
P 		463.5
(-1)
P 		330
(-3)
P 		437.5
(-1.4)
P 		402
C 734.1
(3)
P 		462.2
(-1)
P 		334.5
(-2.9)
P 		326.1
(-3)
P 		408
avr 730.9
(3) 		451.4
(-1.4) 		347.7
(-3) 		404.2
(-2.1) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 755.4
(2.9)
P 		760
(3)
P 		494.5
(-1.1)
P 		465.5
(-1.5)
P 		422.9
(-2.2)
P 		369.6
(-3)
P 		390
B 706
(2.8)
P 		722.6
(3)
P 		607.4
(1.3)
P 		559.8
(0.6)
P 		337.3
(-2.8)
P 		323.1
(-3)
P 		400
C 751.7
(3)
P 		700.9
(2.3)
P 		603.8
(0.9)
P 		494.9
(-0.7)
P 		464.7
(-1.2)
P 		337.2
(-3)
P 		415
avr 737.7
(3) 		727.8
(2.8) 		568.6
(0.4) 		506.7
(-0.5) 		408.3
(-2) 		343.3
(-3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 264.7
(3)
P 		93
(-2.2)
P 		99
(-2)
P 		65.7
(-3)
P 		199
B 233.3
(3)
P 		114.5
(-1.5)
P 		76.5
(-3)
P 		93.2
(-2.4)
P 		157
C 243
(3)
P 		132.9
(-0.5)
P 		116.6
(-1)
P 		55
(-3)
P 		188
avr 247
(3) 		113.5
(-1.6) 		97.4
(-2.1) 		71.3
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 139.2
(-1.4)
P 		270.3
(3)
P 		107.7
(-2.4)
P 		118.1
(-2.1)
P 		127.6
(-1.7)
P 		90
(-3)
P 		180
B 245.7
(3)
P 		240.5
(2.8)
P 		147.5
(-1.7)
P 		148.3
(-1.7)
P 		137.1
(-2.2)
P 		120.5
(-3)
P 		125
C 278.6
(3)
P 		213.9
(0.8)
P 		153.7
(-1.2)
P 		99.5
(-3)
P 		150.4
(-1.3)
P 		112.9
(-2.6)
P 		179
avr 221.2
(2.1) 		241.6
(3) 		136.3
(-1.7) 		122
(-2.4) 		138.4
(-1.6) 		107.8
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190486_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2748
Sequence Type Exemplar sequence
Representative Public ID F33H1.1 NCBI
Target Description F33H1.1 /REP_DB=WormBase Gene ID /WP=CE17763 /CHR=2 /FEA=Sanger Annotation /DEF=locus:daf-19 DNA binding transcription factor (HINXTON) SW:Q09555
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026968(11), NM_001026969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026968 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-19) (daf-19) mRNA, complete cds. 11/11 None
NM_001026969 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-19) (daf-19) mRNA, complete cds. 11/11 None
SNAP00000027284 ENSEMBL cdna:SNAP chromosome:CEL140:II:10157864:10159875:-1 11/11 None
GENEFINDER00000027297 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10157864:10164316:-1 11/11 None
F33H1.1a ENSEMBL cdna:known chromosome:CEL140:II:10157437:10169232:-1 gene:F33H1.1 11/11 None
F33H1.1b ENSEMBL cdna:known chromosome:CEL140:II:10157864:10169232:-1 gene:F33H1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10157860-10169229(-) 100.0 100.0
Public Domain and Genome References
Ensembl F33H1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88701 Hypothetical protein F33H1.1a [Caenorhabditis elegans] ref|NP_001022139.1| abnormal DAuer Formation family member (daf-19) [Caenorhabditis elegans] gb|AAF63475.1| RFX-type transcription factor DAF-19 short variant [Caenorhabditis elegans] 0.0
blast CAC42295 Hypothetical protein F33H1.1b [Caenorhabditis elegans] ref|NP_001022140.1| abnormal DAuer Formation family member (daf-19) [Caenorhabditis elegans] gb|AAF61564.1| RFX-like transcription factor DAF-19 [Caenorhabditis elegans] sp|Q09555|DAF19_CAEEL RFX-like transcription factor daf-19 (Abnormal dauer formation protein 19) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003150 EMBL-EBI DNA-binding RFX 4.6E-60
Pfam IPR003150 EMBL-EBI DNA-binding RFX 4.6E-60
Pfam IPR003150 EMBL-EBI DNA-binding RFX 2.1E-48
Pfam IPR003150 EMBL-EBI DNA-binding RFX 4.6E-60
Sequence
Target Sequence 
>C. ELEGANS:190486_S_AT
ctttgaatcatttggctcacgcttctcgtggagttttgatgaaaccagagcaagttcagc
agatgtatcaagactatattcgagttgatatcaacacagtccaccagcaagccggatgga
tttgtggttgcgatagtgtcatggtgcaccatgtgaacaacgccttcaagcataaccttc
aacggatgagtgcaatggaggtatgggccgagtggctggaaagtattgtggatcaagtgc
tcgccaagtatcacgacaaaccggcaaacgtgattgctaatgtcggaaagcaatttctgc
tcaactggagtttctacacatcgatgatcattcgggatctgactttgcgatcagccatgt
cattcggatctttcactctgattaggttgctggccgatgattacatgtattatttaattg
agtcgaaaattgctaaagccggaaaacaacaactcatcacggtaattcgtgccgacaagg
actggccgttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGAATCATTTGGCTCACGCTTC 519 223 1784 Antisense
GTTGATATCAACACAGTCCACCAGC 256 437 1867 Antisense
TGGTGCACCATGTGAACAACGCCTT 65 551 1925 Antisense
ACAACGCCTTCAAGCATAACCTTCA 540 113 1940 Antisense
AAGTGCTCGCCAAGTATCACGACAA 121 159 2018 Antisense
TCAACTGGAGTTTCTACACATCGAT 437 631 2084 Antisense
GGGATCTGACTTTGCGATCAGCCAT 48 497 2117 Antisense
ATCAGCCATGTCATTCGGATCTTTC 322 29 2133 Antisense
GGATCTTTCACTCTGATTAGGTTGC 148 511 2149 Antisense
AGGTTGCTGGCCGATGATTACATGT 116 57 2167 Antisense
GTGCCGACAAGGACTGGCCGTTGAC 198 479 2252 Antisense
Sequence Source Affymetrix Proprietary Database