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[190482_s_at]

Description Y37A1B.2A /REP_DB=WormBase Gene ID /WP=CE19071 /TR=Q9XXG3 /GB=CAA19486.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Src homology domain 3
Cluster 6grp_high1_10_10 > 39      6grp_total > 49      4grp_total > 52      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 70.5
(-1.3)
P 		109.6
(3)
P 		75.4
(-0.8)
A 		55.2
(-3)
A 		54
B 90.6
(3)
P 		59.7
(-3)
A 		89.9
(2.9)
P 		59.5
(-3)
A 		31
C 96.7
(1.2)
P 		111.4
(3)
M 		61.7
(-3)
P 		67.7
(-2.3)
A 		50
avr 85.9
(1.6) 		93.6
(3) 		75.7
(-0.3) 		60.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 111.2
(3)
P 		81.1
(-0.3)
P 		55.7
(-3)
A 		93
(1)
P 		80.1
(-0.4)
P 		88.7
(0.6)
P 		56
B 41.8
(-2.2)
A 		80.9
(3)
P 		71.1
(1.7)
P 		54.4
(-0.5)
P 		35.6
(-3)
P 		63.9
(0.7)
P 		45
C 99.1
(0.1)
P 		62.2
(-3)
P 		78
(-1.7)
M 		89.7
(-0.7)
P 		134.2
(3)
P 		109.5
(0.9)
P 		72
avr 84
(1.9) 		74.7
(-1) 		68.3
(-3) 		79
(0.4) 		83.3
(1.7) 		87.4
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.7
(3)
P 		23.8
(2.4)
P 		19.7
(1)
A 		8.1
(-3)
A 		18
B 28.9
(3)
P 		14.8
(-2.2)
A 		20.8
(0)
P 		12.7
(-3)
A 		16
C 32
(3)
P 		32
(3)
M 		21.5
(-0.1)
P 		11.4
(-3)
A 		21
avr 28.9
(3) 		23.5
(1.2) 		20.7
(0.3) 		10.7
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20.5
(0)
P 		28.9
(3)
P 		12.1
(-3)
A 		23.6
(1.1)
P 		24.2
(1.3)
P 		21.6
(0.4)
P 		17
B 14.6
(-2.9)
A 		26.9
(3)
P 		17.3
(-1.6)
P 		14.4
(-3)
P 		14.5
(-3)
P 		23.8
(1.5)
P 		13
C 36.7
(1.4)
P 		19
(-2.8)
P 		19.8
(-2.6)
M 		18
(-3)
P 		43.4
(3)
P 		36.7
(1.4)
P 		25
avr 23.9
(1.1) 		24.9
(1.6) 		16.4
(-3) 		18.7
(-1.7) 		27.4
(3) 		27.4
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190482_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10005
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.2A NCBI
Target Description Y37A1B.2A /REP_DB=WormBase Gene ID /WP=CE19071 /TR=Q9XXG3 /GB=CAA19486.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Src homology domain 3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070294(9), NM_070292(9), NM_182290(9), NM_070293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070294 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 9/11 A 
NM_070292 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 9/11 A 
NM_182290 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 9/11 A 
NM_070293 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 None
SNAP00000004227 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14061338:14068439:-1 9/11 None
GENEFINDER00000004234 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14061338:14069819:-1 9/11 None
Y37A1B.2b ENSEMBL cdna:known chromosome:CEL140:IV:14061001:14068513:-1 gene:Y37A1B.2 9/11 A 
Y37A1B.2c ENSEMBL cdna:known chromosome:CEL140:IV:14061338:14069819:-1 gene:Y37A1B.2 9/11 A 
Y37A1B.2d ENSEMBL cdna:known chromosome:CEL140:IV:14061338:14069823:-1 gene:Y37A1B.2 9/11 A 
Y37A1B.2a ENSEMBL cdna:known chromosome:CEL140:IV:14066295:14069823:-1 gene:Y37A1B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14066707-14069825(-) 94.34 100.0
Public Domain and Genome References
Ensembl Y37A1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19487 Hypothetical protein Y37A1B.2b [Caenorhabditis elegans] ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Pfam IPR001452 EMBL-EBI SH3 6.0E-15
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Sequence
Target Sequence 
>C. ELEGANS:190482_S_AT
gcctcatcgcgtccttttgatgattggggaggcgcttcagaagttgctgctccaccatcc
tacggagcccaacatcatcatcagccaacgccatctgtaccggaagtcactagatcttca
tatccatcacagaatgatgattttgacgatgaatggacggatgaggatgatgagcaggta
tttttaaaattttattttaattttttgattgtccagtttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCATCGCGTCCTTTTGATGATT 177 283 256 Antisense
ATCGCGTCCTTTTGATGATTGGGGA 681 35 261 Antisense
TGATGATTGGGGAGGCGCTTCAGAA 83 565 273 Antisense
GCCATCTGTACCGGAAGTCACTAGA 309 281 345 Antisense
TCTGTACCGGAAGTCACTAGATCTT 296 609 349 Antisense
GTCACTAGATCTTCATATCCATCAC 598 465 361 Antisense
AGATCTTCATATCCATCACAGAATG 5 67 367 Antisense
GATGATTTTGACGATGAATGGACGG 50 411 391 Antisense
ATGAATGGACGGATGAGGATGATGA 168 43 404 Antisense
ATGATGAGCAGGTATTTTTAAAATT 109 43 422 Antisense
TAATTTTTTGATTGTCCAGTTTCTG 365 635 453 Antisense
Sequence Source Affymetrix Proprietary Database