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[190480_at] Yeast protein 8248 like

Description F36A2.2 /REP_DB=WormBase Gene ID /WP=CE09942 /TR=Q9XVN8 /GB=CAB03067.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast protein 8248 like
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 84      6grp_total > 66      4grp_total > 02      6grp_highest_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3206
1 2 3 4 range
A 675.4
(-2.5)
P 		681.2
(-2.5)
P 		418.2
(-3)
P 		3544.9
(3)
P 		3127
B 783.5
(-2.4)
P 		509.8
(-2.9)
P 		466.2
(-3)
P 		3624.5
(3)
P 		3158
C 581.6
(-2.7)
P 		461.4
(-3)
P 		473.1
(-3)
P 		3095.6
(3)
P 		2634
avr 680.2
(-2.5) 		550.8
(-2.8) 		452.5
(-3) 		3421.7
(3) 		2969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 529.6
(-2)
P 		604.2
(3)
P 		555.7
(-0.2)
P 		579.7
(1.4)
P 		514.4
(-3)
P 		592
(2.2)
P 		90
B 499.3
(-3)
P 		572.3
(-1.2)
P 		648.1
(0.6)
P 		563.4
(-1.4)
P 		504.4
(-2.9)
P 		744.5
(3)
P 		245
C 474
(-2.5)
P 		593.6
(-0.5)
P 		441.5
(-3)
P 		669.4
(0.7)
P 		483.9
(-2.3)
P 		812.1
(3)
P 		371
avr 501
(-3) 		590
(-0.5) 		548.4
(-1.7) 		604.2
(-0.1) 		500.9
(-3) 		716.2
(3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 245.9
(-1)
P 		147.9
(-2.4)
P 		109.3
(-3)
P 		518.9
(3)
P 		410
B 249.9
(-1.7)
P 		125.9
(-2.8)
P 		108
(-3)
P 		772.4
(3)
P 		664
C 192.5
(-2.1)
P 		132.6
(-3)
P 		164.9
(-2.5)
P 		522
(3)
P 		389
avr 229.4
(-1.7) 		135.5
(-2.9) 		127.4
(-3) 		604.4
(3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 97.6
(-3)
P 		214.9
(3)
P 		121
(-1.8)
P 		147
(-0.5)
P 		155.2
(-0.1)
P 		144.1
(-0.6)
P 		117
B 173.7
(-1.9)
P 		190.5
(-1.1)
P 		157.4
(-2.6)
P 		149.2
(-3)
P 		204.9
(-0.4)
P 		277.6
(3)
P 		128
C 175.7
(-0.6)
P 		181.1
(-0.4)
P 		112.4
(-3)
P 		134.6
(-2.2)
P 		156.6
(-1.3)
P 		271.9
(3)
P 		160
avr 149
(-1.9) 		195.5
(0.9) 		130.3
(-3) 		143.6
(-2.2) 		172.2
(-0.5) 		231.2
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1753
Sequence Type Exemplar sequence
Representative Public ID F36A2.2 NCBI
Target Description F36A2.2 /REP_DB=WormBase Gene ID /WP=CE09942 /TR=Q9XVN8 /GB=CAB03067.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast protein 8248 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059978 NCBI Caenorhabditis elegans F36A2.2 (F36A2.2) mRNA, complete cds. 11/11 None
SNAP00000004919 ENSEMBL cdna:SNAP chromosome:CEL140:I:8809873:8812821:-1 11/11 None
GENEFINDER00000004939 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8809873:8812821:-1 11/11 None
F36A2.2 ENSEMBL cdna:known chromosome:CEL140:I:8809873:8812821:-1 gene:F36A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8809803-8812752(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast protein 8248 like
Ensembl F36A2.2
Entrez Gene 185334 Entrez gene
SwissProt Q9XVN8 EMBL-EBI
WormBase CE09942 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247042_AT nitrogen regulation family protein at
CANINE:1601453_AT similar to PP3111 protein cfa
CANINE_2:CFA.6191.1.A1_AT similar to PP3111 protein cfa
CANINE_2:CFA.6191.1.A1_S_AT similar to PP3111 protein cfa
CANINE_2:CFAAFFX.9908.1.S1_AT similar to PP3111 protein cfa
DROSOPHILA_2:1636129_S_AT dm
DROSGENOME1:145520_AT dm
CHICKEN:GGA.10992.1.A1_AT dihydrouridine synthase 1-like (S. cerevisiae) gga
CHICKEN:GGA.5501.1.S1_AT dihydrouridine synthase 1-like (S. cerevisiae) gga
CHICKEN:GGA.5501.2.S1_A_AT dihydrouridine synthase 1-like (S. cerevisiae) gga
HG-U133_PLUS_2:217912_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-U133A:217912_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-FOCUS:217912_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-U133A_2:217912_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HU35KSUBA:RC_AA287274_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
U133_X3P:G11545903_3P_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-U95C:64134_S_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-U95C:64135_R_AT dihydrouridine synthase 1-like (S. cerevisiae) hs
HG-U95E:73190_AT Dihydrouridine synthase 1-like (S. cerevisiae) hs
MOUSE430A_2:1435734_X_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MOE430A:1435734_X_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MOUSE430_2:1435734_X_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MU11KSUBA:AA184083_S_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MG-U74AV2:96604_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MG-U74CV2:167321_I_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MOE430A:1423943_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MOUSE430A_2:1423943_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MOUSE430_2:1423943_AT dihydrouridine synthase 1-like (S. cerevisiae) mm
MU19KSUBB:TC31939_AT Dihydrouridine synthase 1-like (S. cerevisiae) (Dus1l), mRNA mm
MU19KSUBC:TC41172_AT Dihydrouridine synthase 1-like (S. cerevisiae) (Dus1l), mRNA mm
MU19KSUBC:TC41172_G_AT Dihydrouridine synthase 1-like (S. cerevisiae) (Dus1l), mRNA mm
YEAST_2:1773118_AT Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8033 tRNA processing inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
50660 FAD binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03067 Hypothetical protein F36A2.2 [Caenorhabditis elegans] ref|NP_492379.1| F36A2.2 [Caenorhabditis elegans] 0.0
blast CAE66975 Hypothetical protein CBG12371 [Caenorhabditis briggsae] 0.0
blast AAH76792 MGC83715 protein [Xenopus laevis] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001269 EMBL-EBI Protein of unknown function UPF0034 1.9E-70
Sequence
Target Sequence 
>C. ELEGANS:190480_AT
gaactagtgctattcgggctcatgtttttagaatctgccatcacagtctcttagaatatg
aagatctccggatgcgagtatccttagaacatcgtatcgaagattttgaaaatattgttg
aagaacttgcaaagagagcaaaatcagacgcagaagcagggaaaaatcgagaagttgaag
caagaacactttttgaaaatattcgaaacggaatactaatgaatgcaatagaagtttcaa
agcaaccccattggatttcaaaaccatacttcagattgaaagaggttgcaaaagaatcga
ttgtcggagaaggagaaaagactttccgagagaaacagaaggaaaagcttgcacagactg
caaaggaaatgggcgtatctatgaaacaagctcgtaaacgagaacgtcggcaactatcag
gagcccggatccttgaagcaaagaagatcaagttccctccatgtgcccgttgtggacaac
ctgctggacaaggatgtgctaatagcaaatgcaaaaaatgttgtagatatcagagtaaac
acgaattattggattgtaaacctcatcgctatctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTAGTGCTATTCGGGCTCATGT 19 351 983 Antisense
GAATCTGCCATCACAGTCTCTTAGA 248 329 1013 Antisense
AAGATCTCCGGATGCGAGTATCCTT 590 155 1043 Antisense
GAGTATCCTTAGAACATCGTATCGA 446 399 1058 Antisense
GAAGTTTCAAAGCAACCCCATTGGA 16 335 1213 Antisense
GGATTTCAAAACCATACTTCAGATT 507 507 1235 Antisense
GGGCGTATCTATGAAACAAGCTCGT 116 493 1353 Antisense
GAGAACGTCGGCAACTATCAGGAGC 288 391 1382 Antisense
ATCAGGAGCCCGGATCCTTGAAGCA 17 27 1398 Antisense
GCCCGTTGTGGACAACCTGCTGGAC 435 281 1447 Antisense
GATTGTAAACCTCATCGCTATCTCT 122 435 1534 Antisense
Sequence Source Affymetrix Proprietary Database