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[190476_at] PROTEIN PHOSPHATASE

Description C34C12.3 /REP_DB=WormBase Gene ID /WP=CE02156 /TR=SW:Q09496 /GB=CAA87100.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=PROTEIN PHOSPHATASE
Cluster 6grp_total > 46      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 88
(-0.7)
A 		57.9
(-3)
A 		64.2
(-2.5)
A 		134.8
(3)
P 		77
B 95.5
(3)
A 		39.6
(-0.8)
A 		8
(-3)
A 		43.3
(-0.6)
A 		88
C 94.7
(2.1)
A 		103.8
(3)
A 		58.2
(-1.3)
A 		40.4
(-3)
A 		63
avr 92.7
(3) 		67.1
(-0.1) 		43.5
(-3) 		72.8
(0.6) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 30.2
(2.3)
A 		4
(-3)
A 		33.9
(3)
A 		11.4
(-1.5)
A 		18.9
(-0)
A 		25.2
(1.3)
A 		30
B 45
(3)
A 		18.7
(-1.1)
A 		27.2
(0.2)
A 		6.7
(-3)
A 		6.5
(-3)
A 		25.4
(-0.1)
A 		39
C 13.6
(-2.3)
A 		81
(3)
A 		12
(-2.4)
A 		11.9
(-2.4)
A 		4.8
(-3)
A 		44.6
(0.1)
A 		76
avr 29.6
(1.8) 		34.6
(3) 		24.4
(0.5) 		10
(-3) 		10.1
(-3) 		31.7
(2.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32.1
(3)
A 		12.6
(-3)
A 		16.8
(-1.7)
A 		19.7
(-0.8)
P 		20
B 30.4
(3)
A 		9.8
(-1.3)
A 		1.8
(-3)
A 		9.2
(-1.4)
A 		29
C 31.3
(3)
A 		29.8
(2.6)
A 		20.3
(0.3)
A 		6.8
(-3)
A 		25
avr 31.3
(3) 		17.4
(-1.3) 		13
(-2.7) 		11.9
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.6
(1.2)
A 		1.4
(-3)
A 		7.4
(3)
A 		2.9
(-1.5)
A 		5.7
(1.3)
A 		6.1
(1.7)
A 		6
B 15.7
(3)
A 		6.2
(-1.1)
A 		6.6
(-0.9)
A 		1.8
(-3)
A 		2.6
(-2.7)
A 		9.5
(0.3)
A 		14
C 5.1
(-2.1)
A 		24.7
(3)
A 		3.1
(-2.6)
A 		2.4
(-2.8)
A 		1.5
(-3)
A 		14.9
(0.5)
A 		23
avr 8.8
(1.6) 		10.8
(3) 		5.7
(-0.6) 		2.4
(-3) 		3.3
(-2.4) 		10.2
(2.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6334
Sequence Type Exemplar sequence
Representative Public ID C34C12.3 NCBI
Target Description C34C12.3 /REP_DB=WormBase Gene ID /WP=CE02156 /TR=SW:Q09496 /GB=CAA87100.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=PROTEIN PHOSPHATASE
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065313 NCBI Caenorhabditis elegans C34C12.3 (C34C12.3) mRNA, complete cds. 11/11 None
SNAP00000028571 ENSEMBL cdna:SNAP chromosome:CEL140:III:3461689:3466963:1 11/11 None
GENEFINDER00000028583 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3461689:3466963:1 11/11 None
C34C12.3 ENSEMBL cdna:known chromosome:CEL140:III:3461688:3467647:1 gene:C34C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3461688-3466963(+) 100.0 100.0
Public Domain and Genome References
Gene Title PROTEIN PHOSPHATASE
Ensembl C34C12.3
Entrez Gene 183199 Entrez gene
SwissProt Q09496 EMBL-EBI
WormBase CE31433 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262476_AT serine/threonine protein phosphatase, putative at
CANINE_2:CFA.20123.1.S1_S_AT similar to Serine/threonine protein phosphatase 6 (PP6) cfa
CANINE_2:CFAAFFX.30941.1.S1_S_AT similar to Serine/threonine protein phosphatase 6 (PP6) cfa
DROSOPHILA_2:1636945_AT Protein phosphatase V dm
DROSGENOME1:143311_AT Protein phosphatase V dm
HG-U133_PLUS_2:206174_S_AT protein phosphatase 6, catalytic subunit hs
HG-U133A_2:206174_S_AT protein phosphatase 6, catalytic subunit hs
HG-U133A:206174_S_AT protein phosphatase 6, catalytic subunit hs
HG-FOCUS:206174_S_AT protein phosphatase 6, catalytic subunit hs
HG-U133A_2:203529_AT protein phosphatase 6, catalytic subunit hs
HG-U133A:203529_AT protein phosphatase 6, catalytic subunit hs
HG-U133_PLUS_2:203529_AT protein phosphatase 6, catalytic subunit hs
HG-FOCUS:203529_AT protein phosphatase 6, catalytic subunit hs
HUGENEFL:X92972_AT protein phosphatase 6, catalytic subunit hs
U133_X3P:G7706488_3P_AT protein phosphatase 6, catalytic subunit hs
U133_X3P:G5729987_3P_S_AT protein phosphatase 6, catalytic subunit hs
HG-U95AV2:37581_AT protein phosphatase 6, catalytic subunit hs
HG-U133_PLUS_2:225426_AT Protein phosphatase 6, catalytic subunit hs
HG-U133B:225426_AT Protein phosphatase 6, catalytic subunit hs
HG-U133_PLUS_2:225429_AT Protein phosphatase 6, catalytic subunit hs
HG-U133B:225429_AT Protein phosphatase 6, catalytic subunit hs
HG-U95B:53149_AT Protein phosphatase 6, catalytic subunit hs
HG-U95C:64005_AT Protein phosphatase 6, catalytic subunit hs
U133_X3P:HS.7256.1.A1_3P_AT Protein phosphatase 6, catalytic subunit hs
U133_X3P:HS.7256.1.A2_3P_AT Protein phosphatase 6, catalytic subunit hs
HU35KSUBB:RC_AA130814_AT Protein phosphatase 6, catalytic subunit hs
HU35KSUBB:RC_N35998_AT Protein phosphatase 6, catalytic subunit hs
HU35KSUBC:RC_N25718_AT Protein phosphatase 6, catalytic subunit hs
MU11KSUBA:C76462_RC_S_AT protein phosphatase 6, catalytic subunit mm
MU11KSUBB:W13529_S_AT protein phosphatase 6, catalytic subunit mm
MU11KSUBB:MSA.6292.0_S_AT protein phosphatase 6, catalytic subunit mm
MG-U74AV2:103947_AT protein phosphatase 6, catalytic subunit mm
MG-U74CV2:138561_AT protein phosphatase 6, catalytic subunit mm
MG-U74AV2:160821_R_AT protein phosphatase 6, catalytic subunit mm
MG-U74CV2:169985_I_AT protein phosphatase 6, catalytic subunit mm
MOE430A:1424347_AT protein phosphatase 6, catalytic subunit mm
MOUSE430A_2:1424347_AT protein phosphatase 6, catalytic subunit mm
MOUSE430_2:1424347_AT protein phosphatase 6, catalytic subunit mm
MOE430A:1424346_AT protein phosphatase 6, catalytic subunit mm
MOUSE430A_2:1424346_AT protein phosphatase 6, catalytic subunit mm
MOUSE430_2:1424346_AT protein phosphatase 6, catalytic subunit mm
MU19KSUBA:TC21341_AT Protein phosphatase 6, catalytic subunit (Ppp6c), mRNA mm
MU19KSUBB:TC34859_AT Protein phosphatase 6, catalytic subunit (Ppp6c), mRNA mm
RAE230A:1387801_AT protein phosphatase V rn
RAT230_2:1387801_AT protein phosphatase V rn
RG-U34A:RC_AA955808_AT protein phosphatase V rn
RAE230B:1383310_AT Protein phosphatase V rn
RAT230_2:1383310_AT Protein phosphatase V rn
RG-U34B:RC_AI030892_AT Protein phosphatase V rn
RG-U34B:RC_AI043878_AT Protein phosphatase V rn
YEAST_2:1771422_AT Type 2A-related serine-threonine phosphatase that functions in the G1/S transition of the mitotic cycle; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87100 Hypothetical protein C34C12.3 [Caenorhabditis elegans] ref|NP_497714.2| C34C12.3 [Caenorhabditis elegans] sp|Q09496|YQF3_CAEEL Putative serine/threonine protein phosphatase C34C12.3 in chromosome III 0.0
blast T19701 phosphoprotein phosphatase (EC 3.1.3.16) C34C12.3 - Caenorhabditis elegans 0.0
blast CAE64960 Hypothetical protein CBG09794 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.0E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.6E-33
Sequence
Target Sequence 
>C. ELEGANS:190476_AT
tgtcttcttctcaaatatccgaatcaaatcacactgctccgcggaaatcatgaatctcgt
cgaatttccaatgtttatggattctacgatgaatgtcagaataaatatggacacggaaat
gtgcacaaatggttctgtaaagtattcgacgttcttccaattggagctttaattgatgaa
tcagtactgtgtgtacatggaggactttcacctgatattcgaacaattgatagtcttatg
ttacttgatagagctcaagaagttcctaataagggtcctctatgtgacataatgtggtcg
gatccggatgatgacgtcgaagattgggtgattagtcaaagaggagctggatttgtgttc
ggagcaaaagtgacagaagaattcctaatgaataatgatctttcactactttgccggtcc
catcaactcgttgacgaaggatttaagtatatgtttaatgagaaactcgctaccgtttgg
tcggctccaaactactgctatcgatgcggaaacgcggcggccgtattcgaaatcgacgga
aacaatcgctcgacgaaatatttcaacgcagttcccgatggaagccgtgagaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTTCTTCTCAAATATCCGAATC 323 559 535 Antisense
TATCCGAATCAAATCACACTGCTCC 336 657 550 Antisense
GAATCTCGTCGAATTTCCAATGTTT 375 329 586 Antisense
AGTATTCGACGTTCTTCCAATTGGA 701 61 675 Antisense
GGAGGACTTTCACCTGATATTCGAA 513 515 733 Antisense
TAATGATCTTTCACTACTTTGCCGG 629 635 927 Antisense
CGGTCCCATCAACTCGTTGACGAAG 699 243 949 Antisense
GCTACCGTTTGGTCGGCTCCAAACT 419 303 1003 Antisense
TGCGGAAACGCGGCGGCCGTATTCG 12 557 1039 Antisense
ATATTTCAACGCAGTTCCCGATGGA 370 19 1092 Antisense
GTTCCCGATGGAAGCCGTGAGAAGC 695 441 1105 Antisense
Sequence Source Affymetrix Proprietary Database