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[190471_at]

Description F07F6.4 /REP_DB=WormBase Gene ID /WP=CE01896 /TR=SW:Q09531 /GB=AAC46777.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster 6grp_total > 96      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 72.6
(-2.9)
A 		70
(-3)
P 		113.2
(-1.1)
P 		209.2
(3)
P 		139
B 43.3
(-3)
A 		89.5
(0.9)
A 		84.6
(0.5)
M 		114.5
(3)
P 		71
C 90.8
(-1.4)
A 		40.9
(-3)
A 		76.2
(-1.9)
A 		229.8
(3)
P 		189
avr 68.9
(-2.9) 		66.8
(-3) 		91.3
(-1.8) 		184.5
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 60.2
(-2.3)
A 		43.1
(-3)
A 		105.6
(-0.5)
P 		181.3
(2.5)
P 		193.3
(3)
P 		162.8
(1.8)
P 		150
B 95.9
(-1.9)
A 		53.8
(-3)
A 		64.8
(-2.7)
A 		119.3
(-1.3)
P 		247.1
(2)
P 		284.4
(3)
P 		231
C 68.2
(-2.6)
A 		91.4
(-2)
A 		53.5
(-3)
A 		145.5
(-0.6)
P 		176.6
(0.1)
P 		288
(3)
P 		235
avr 74.8
(-2.6) 		62.8
(-3) 		74.6
(-2.6) 		148.7
(-0.2) 		205.7
(1.7) 		245.1
(3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 26.4
(1.4)
A 		15.2
(-3)
P 		29.6
(2.6)
P 		30.6
(3)
P 		15
B 13.8
(-3)
A 		22.1
(1.7)
A 		19.6
(0.3)
M 		24.4
(3)
P 		11
C 30.1
(1.1)
A 		11.8
(-3)
A 		26.6
(0.3)
A 		38.7
(3)
P 		27
avr 23.4
(-0.2) 		16.4
(-3) 		25.3
(0.6) 		31.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 11.1
(-3)
A 		15.3
(-2.5)
A 		23
(-1.5)
P 		46
(1.4)
P 		58.3
(3)
P 		39.6
(0.6)
P 		47
B 33.4
(-1.8)
A 		17.9
(-2.9)
A 		15.7
(-3)
A 		31.6
(-1.9)
P 		100.4
(2.6)
P 		106.1
(3)
P 		90
C 25.3
(-2.2)
A 		27.9
(-2)
A 		13.6
(-3)
A 		29.3
(-1.9)
P 		57.2
(0.2)
P 		96.4
(3)
P 		83
avr 23.3
(-2.4) 		20.4
(-2.7) 		17.4
(-3) 		35.6
(-1.3) 		72
(2.2) 		80.7
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5224
Sequence Type Exemplar sequence
Representative Public ID F07F6.4 NCBI
Target Description F07F6.4 /REP_DB=WormBase Gene ID /WP=CE01896 /TR=SW:Q09531 /GB=AAC46777.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170990 NCBI Caenorhabditis elegans F07F6.7 (F07F6.7) mRNA, complete cds. 11/11 None
SNAP00000006555 ENSEMBL cdna:SNAP chromosome:CEL140:II:5422813:5423801:-1 11/11 None
GENEFINDER00000006570 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5422813:5425688:-1 11/11 None
F07F6.7 ENSEMBL cdna:known chromosome:CEL140:II:5422813:5423801:-1 gene:F07F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5422810-5429535(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07F6.7
Entrez Gene 260090 Entrez gene
SwissProt Q8WQF8 EMBL-EBI
WormBase CE29956 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6869 lipid transport inferred from electronic annotation QuickGO AmiGO
42157 lipoprotein metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans 0.0
blast AAL38956 Hypothetical protein F07F6.7 [Caenorhabditis elegans] ref|NP_740988.1| F07F6.7 [Caenorhabditis elegans] 1.0E-145
blast T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans 1.0E-145
blast AAL38956 Hypothetical protein F07F6.7 [Caenorhabditis elegans] ref|NP_740988.1| F07F6.7 [Caenorhabditis elegans] 1.0E-144
blast AAL38957 Hypothetical protein F07F6.8 [Caenorhabditis elegans] ref|NP_740989.1| F07F6.8 [Caenorhabditis elegans] 1.0E-121
blast AAL38957 Hypothetical protein F07F6.8 [Caenorhabditis elegans] ref|NP_740989.1| F07F6.8 [Caenorhabditis elegans] 8.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740988.1 2 76-98,171-193
F07F6.7 2 76-98,171-193
SNAP00000006555 2 76-98,171-193
GENEFINDER00000006570 4 80-102,106-123,374-396,469-491
Sequence
Target Sequence 
>C. ELEGANS:190471_AT
gaaggcttcagccatcgcaacaactgtcggaagttccgttgatattgcatctggacttgc
agttttcggaggactattcttcatgccaccagttgcaattgctggtctcatcgttggagc
agcttccggcgtctcaaatgtcgcaactggagtgaacaagaagcttgctaccgatcataa
aatcagagaaatcaatcgaatgctcgcggaggatgcgaagttttttgaggaacttcttca
ttcgagaaatgatttgttgaacgaagtgaggagatttgtggaggacaagcaatcgtcaaa
gattttcaaaaacttcgacgatgtccagtctcatttgaaaacactttttggtgtttctct
cgccggaatcacaggattcggaattaaaatggccgcatcttccatgggccatctcacgaa
tgcacttatgaaaggaatgctgcagagcgttgcagccatcggaatcgttctggacggtgt
taccctggccatgagcgctaatacgcttaaaaacggatcttcctctgaattggcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCTTCAGCCATCGCAACAACT 321 333 2865 Antisense
GCATCTGGACTTGCAGTTTTCGGAG 280 307 2911 Antisense
TTCGGAGGACTATTCTTCATGCCAC 529 695 2929 Antisense
CTTCCGGCGTCTCAAATGTCGCAAC 358 209 2987 Antisense
AACTTCGACGATGTCCAGTCTCATT 302 139 3175 Antisense
TTCTCTCGCCGGAATCACAGGATTC 210 693 3219 Antisense
AAAATGGCCGCATCTTCCATGGGCC 2 133 3250 Antisense
GGCCATCTCACGAATGCACTTATGA 583 543 3271 Antisense
CGTTGCAGCCATCGGAATCGTTCTG 622 245 3312 Antisense
GAATCGTTCTGGACGGTGTTACCCT 146 329 3326 Antisense
ACGGATCTTCCTCTGAATTGGCAGG 610 95 3377 Antisense
Sequence Source Affymetrix Proprietary Database