[Home] | [Total List]

[190466_at] C-lectin binding domain

Description F10F2.7 /REP_DB=WormBase Gene ID /WP=CE00952 /TR=Q19313 /GB=CAA84652.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster 6grp_total > 88      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 1.2
(-3)
A 		36.5
(1.4)
A 		5.6
(-2.5)
A 		49.4
(3)
A 		48
B 4.5
(-2)
A 		20.8
(3)
A 		1.2
(-3)
A 		4.1
(-2.1)
A 		20
C 2.2
(-3)
A 		6.3
(-1.3)
A 		16.8
(3)
A 		9.7
(0.1)
A 		15
avr 2.6
(-3) 		21.2
(3) 		7.9
(-1.3) 		21.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 15.6
(-2.4)
A 		8.9
(-2.7)
A 		21.2
(-2.2)
A 		2
(-3)
A 		83.1
(0.5)
P 		139.3
(3)
P 		137
B 1
(-3)
A 		6.4
(-2.7)
A 		1.8
(-3)
A 		3
(-2.9)
A 		48.6
(-0.4)
P 		112
(3)
P 		111
C 3.1
(-3)
A 		24.4
(-1.9)
A 		12.7
(-2.5)
A 		2.5
(-3)
A 		56
(-0.3)
P 		122
(3)
P 		120
avr 6.6
(-2.8) 		13.2
(-2.5) 		11.9
(-2.5) 		2.5
(-3) 		62.6
(-0) 		124.4
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		7.9
(3)
A 		1.5
(-2.1)
A 		7.2
(2.4)
A 		8
B 1.5
(-1.5)
A 		5.1
(3)
A 		0.3
(-3)
A 		0.9
(-2.3)
A 		5
C 0.7
(-3)
A 		1.8
(-1.7)
A 		5.9
(3)
A 		1.6
(-2)
A 		5
avr 0.9
(-3) 		4.9
(3) 		2.6
(-0.5) 		3.2
(0.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 2.9
(-2.6)
A 		3.1
(-2.5)
A 		4.6
(-2.3)
A 		0.5
(-3)
A 		25.1
(1.4)
P 		33.9
(3)
P 		33
B 0.3
(-3)
A 		2.1
(-2.7)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		19.7
(-0.2)
P 		41.8
(3)
P 		42
C 1.1
(-2.9)
A 		7.5
(-2)
A 		3.2
(-2.6)
A 		0.5
(-3)
A 		18.1
(-0.4)
P 		40.9
(3)
P 		40
avr 1.4
(-2.9) 		4.2
(-2.4) 		2.7
(-2.7) 		0.6
(-3) 		21
(0.2) 		38.9
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6776
Sequence Type Exemplar sequence
Representative Public ID F10F2.7 NCBI
Target Description F10F2.7 /REP_DB=WormBase Gene ID /WP=CE00952 /TR=Q19313 /GB=CAA84652.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065543 NCBI Caenorhabditis elegans F10F2.7 (F10F2.7) mRNA, complete cds. 11/11 None
SNAP00000027608 ENSEMBL cdna:SNAP chromosome:CEL140:III:4628410:4631262:1 11/11 None
GENEFINDER00000027618 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4628410:4634392:1 11/11 None
F10F2.7 ENSEMBL cdna:known chromosome:CEL140:III:4628410:4631051:1 gene:F10F2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4628409-4631051(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-lectin binding domain
Ensembl F10F2.7
Entrez Gene 184310 Entrez gene
SwissProt Q19313 EMBL-EBI
WormBase CE00952 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
blast CAA84654 Hypothetical protein F10F2.8 [Caenorhabditis elegans] ref|NP_497946.1| F10F2.8 [Caenorhabditis elegans] 0.0
blast CAA84655 Hypothetical protein F10F2.5 [Caenorhabditis elegans] ref|NP_497947.2| F10F2.5 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190466_AT
gattcagcgagttcccaagagtaacatcgggccaaagatggtgtcacaaatatgttcatg
gagcacctttgccatatgacgacgctgagaagaaatgtgccgaaatgggagcccatcttt
ctgggttcacgacacaggaagagttcaaatttctcaacgaactcgtaaataaagaatatc
ctaataaaaacgacatagaagtgtggctgggagcacaacgaaaaatgtcatgtccggacg
caggaaagaacttcaatggaggattctctacaaacgaatttgataattgtgctcgtagtc
gtgtgttcgaatggcgaaatggagttgctaaaaatccaccggactttattggttccggct
atgacaactgggctgaactagacgagcctaatcatctttcagacaaggaacgatgtgtgg
tcatgatgcacgggaaaataacgaagtattgggggtattcaagcaaatatcatgatcgtc
gagacatgcaaatcaatgacattttctgtgattggcatttcgaatatttttgtgggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGCGAGTTCCCAAGAGTAAC 194 431 1325 Antisense
AATATGTTCATGGAGCACCTTTGCC 607 173 1373 Antisense
CACCTTTGCCATATGACGACGCTGA 141 201 1388 Antisense
AAATGTGCCGAAATGGGAGCCCATC 300 121 1417 Antisense
CCATCTTTCTGGGTTCACGACACAG 524 271 1437 Antisense
AAAATGTCATGTCCGGACGCAGGAA 204 133 1546 Antisense
GGACTTTATTGGTTCCGGCTATGAC 170 525 1665 Antisense
TCCGGCTATGACAACTGGGCTGAAC 90 593 1678 Antisense
GACGAGCCTAATCATCTTTCAGACA 199 379 1705 Antisense
GACATTTTCTGTGATTGGCATTTCG 261 371 1822 Antisense
GGCATTTCGAATATTTTTGTGGGCT 407 537 1838 Antisense
Sequence Source Affymetrix Proprietary Database