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[190465_at] glucose 1-deydrogenase

Description W03F9.9 /REP_DB=WormBase Gene ID /WP=CE14538 /TR=O16995 /GB=AAG24204.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucose 1-deydrogenase
Cluster 6grp_total > 15      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.5
(-3)
A 		12.1
(3)
A 		5.8
(-2)
A 		11.6
(2.6)
A 		8
B 5.6
(-0.8)
A 		8.8
(3)
A 		3.7
(-3)
A 		4
(-2.6)
A 		5
C 7.8
(1.1)
A 		9.5
(3)
A 		4.1
(-3)
A 		9
(2.4)
A 		5
avr 6
(-1.4) 		10.1
(3) 		4.5
(-3) 		8.2
(1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.6
(3)
A 		7.4
(2.8)
A 		5.1
(-0.1)
A 		3.8
(-1.7)
A 		3.8
(-1.7)
A 		2.7
(-3)
A 		5
B 6.8
(1.7)
A 		6.2
(0.3)
A 		7.4
(3)
A 		5.2
(-1.9)
A 		5.7
(-0.8)
A 		4.7
(-3)
A 		3
C 17.6
(3)
A 		14.5
(1.7)
A 		6.4
(-1.7)
A 		9.6
(-0.4)
A 		3.3
(-3)
A 		6.4
(-1.7)
A 		14
avr 10.7
(3) 		9.4
(1.8) 		6.3
(-1.1) 		6.2
(-1.2) 		4.3
(-3) 		4.6
(-2.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(-2.5)
A 		2.6
(3)
A 		1.5
(-3)
A 		1.7
(-1.9)
A 		1
B 1.8
(1.3)
A 		2.2
(3)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		1
C 2.6
(2.5)
A 		2.7
(3)
A 		1.4
(-3)
A 		1.5
(-2.5)
A 		1
avr 2
(0.5) 		2.5
(3) 		1.3
(-3) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-0.8)
A 		2.6
(3)
A 		1.1
(-1.7)
A 		1
(-2.1)
A 		1.1
(-1.7)
A 		0.7
(-3)
A 		2
B 2.4
(3)
A 		2.1
(1.2)
A 		1.8
(-0.6)
A 		1.4
(-3)
A 		2.3
(2.4)
A 		1.7
(-1.2)
A 		1
C 6.5
(3)
A 		4.4
(0.7)
A 		1.6
(-2.4)
A 		1.9
(-2.1)
A 		1.1
(-3)
A 		2.1
(-1.9)
A 		5
avr 3.4
(3) 		3
(1.8) 		1.5
(-2.7) 		1.4
(-3) 		1.5
(-2.7) 		1.5
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15541
Sequence Type Exemplar sequence
Representative Public ID W03F9.9 NCBI
Target Description W03F9.9 /REP_DB=WormBase Gene ID /WP=CE14538 /TR=O16995 /GB=AAG24204.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucose 1-deydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070742 NCBI Caenorhabditis elegans W03F9.9 (W03F9.9) mRNA, complete cds. 11/11 None
SNAP00000001165 ENSEMBL cdna:SNAP chromosome:CEL140:V:138720:140053:1 11/11 None
GENEFINDER00000001176 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:138720:140053:1 11/11 None
W03F9.9 ENSEMBL cdna:known chromosome:CEL140:V:138720:140053:1 gene:W03F9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:138719-140053(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose 1-deydrogenase
Ensembl W03F9.9
Entrez Gene 189164 Entrez gene
SwissProt O16995 EMBL-EBI
WormBase CE14538 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503143 W03F9.9 [Caenorhabditis elegans] gb|AAG24204.1| Hypothetical protein W03F9.9 [Caenorhabditis elegans] 1.0E-146
blast CAE61846 Hypothetical protein CBG05820 [Caenorhabditis briggsae] 3.0E-99
blast AAA82473 Hypothetical protein C06E4.6 [Caenorhabditis elegans] ref|NP_501154.1| C06E4.6 [Caenorhabditis elegans] 5.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.4E-53
Sequence
Target Sequence 
>C. ELEGANS:190465_AT
aaccaatacgtctaccggagtcgagacgtgcttgaagaccttccagctgaatttccagtc
cgtcgttgagatgactcaaaagatccgaccacatttggcaaatacacatggggagattgt
caatgtgtctagtgttggtgccggaccagctgccgaaaaccgattcccatactactcagc
tgccaaagcagctctggatcaatattcacgtaatacagcgatcgatctgattcctgatgg
gatccgtgttaacatcgttcaacccggcttcgtagccaccggtttcaccactgcggcaag
tggaatgagcccagatgcttctgctaaaatgtacgaaggaatcggagccaacacgagctg
cattccggctggttactgtggacgtccggagcatctggcgtccgttatcgcgttccttgc
cgatcggaaagcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAATACGTCTACCGGAGTCGAG 694 143 327 Antisense
CGAGACGTGCTTGAAGACCTTCCAG 566 249 348 Antisense
GACCTTCCAGCTGAATTTCCAGTCC 32 383 363 Antisense
TGTGTCTAGTGTTGGTGCCGGACCA 424 555 450 Antisense
GCAGCTCTGGATCAATATTCACGTA 493 313 514 Antisense
TACAGCGATCGATCTGATTCCTGAT 630 641 540 Antisense
GAATGAGCCCAGATGCTTCTGCTAA 278 331 629 Antisense
AGCCAACACGAGCTGCATTCCGGCT 655 83 672 Antisense
TCCGGCTGGTTACTGTGGACGTCCG 496 591 690 Antisense
TGGACGTCCGGAGCATCTGGCGTCC 17 547 705 Antisense
GTTCCTTGCCGATCGGAAAGCGTCG 368 433 738 Antisense
Sequence Source Affymetrix Proprietary Database