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[190464_at] epoxide hydrolase like

Description C45B11.2 /REP_DB=WormBase Gene ID /WP=CE05426 /TR=Q18638 /GB=CAA98430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=epoxide hydrolase like
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 80      6grp_total > 05      4grp_total > 51      6grp_highest_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 253.7
(1.6)
P 		296.3
(3)
P 		261.1
(1.9)
P 		107.2
(-3)
P 		189
B 218.1
(-0.8)
P 		342.7
(3)
P 		174.3
(-2.2)
P 		148.5
(-3)
P 		194
C 235.8
(0.4)
P 		307
(3)
P 		213.3
(-0.5)
P 		145.1
(-3)
P 		162
avr 235.9
(0.4) 		315.3
(3) 		216.2
(-0.3) 		133.6
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 336.6
(3)
P 		277.3
(1.3)
P 		198.3
(-1)
P 		229.7
(-0.1)
P 		128.8
(-3)
P 		170.4
(-1.8)
P 		208
B 349.9
(3)
P 		287.2
(1.3)
P 		130.9
(-2.9)
P 		258.6
(0.5)
P 		126.4
(-3)
P 		128.4
(-2.9)
P 		224
C 531.6
(3)
P 		261.6
(-0.8)
P 		208
(-1.6)
P 		239.9
(-1.1)
P 		141
(-2.5)
P 		105.5
(-3)
P 		426
avr 406
(3) 		275.4
(0.1) 		179.1
(-2) 		242.7
(-0.6) 		132.1
(-3) 		134.8
(-2.9) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 92.4
(3)
P 		64.3
(0.8)
P 		68.3
(1.1)
P 		15.7
(-3)
P 		77
B 69.5
(1.3)
P 		84.6
(3)
P 		40.4
(-2)
P 		31.7
(-3)
P 		53
C 78.1
(2)
P 		88.3
(3)
P 		74.3
(1.7)
P 		24.5
(-3)
P 		64
avr 80
(3) 		79.1
(2.9) 		61
(1) 		24
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 62
(-0.7)
P 		98.6
(3)
P 		43.2
(-2.6)
P 		58.3
(-1.1)
P 		38.9
(-3)
P 		41.5
(-2.7)
P 		60
B 121.7
(3)
P 		95.6
(1.3)
P 		31.8
(-3)
P 		68.5
(-0.6)
P 		51.4
(-1.7)
P 		47.9
(-1.9)
P 		90
C 197
(3)
P 		79.8
(-1.3)
P 		53
(-2.3)
P 		48.2
(-2.5)
P 		45.6
(-2.6)
P 		35.3
(-3)
P 		162
avr 126.9
(3) 		91.3
(0.5) 		42.7
(-2.9) 		58.3
(-1.8) 		45.3
(-2.7) 		41.6
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12869
Sequence Type Exemplar sequence
Representative Public ID C45B11.2 NCBI
Target Description C45B11.2 /REP_DB=WormBase Gene ID /WP=CE05426 /TR=Q18638 /GB=CAA98430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=epoxide hydrolase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073410 NCBI Caenorhabditis elegans C45B11.2 (C45B11.2) mRNA, complete cds. 11/11 None
SNAP00000011920 ENSEMBL cdna:SNAP chromosome:CEL140:V:11046767:11048286:1 11/11 None
GENEFINDER00000011924 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11045405:11048286:1 11/11 None
C45B11.2 ENSEMBL cdna:known chromosome:CEL140:V:11045617:11048298:1 gene:C45B11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11045616-11048286(+) 100.0 100.0
Public Domain and Genome References
Gene Title epoxide hydrolase like
Ensembl C45B11.2
Entrez Gene 179528 Entrez gene
SwissProt Q18638 EMBL-EBI
WormBase CE05426 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98430 Hypothetical protein C45B11.2 [Caenorhabditis elegans] ref|NP_505811.1| C45B11.2 [Caenorhabditis elegans] 0.0
blast CAE75164 Hypothetical protein CBG23101 [Caenorhabditis briggsae] 0.0
blast CAE75164 Hypothetical protein CBG23101 [Caenorhabditis briggsae] 1.0E-164
blast CAC35886 Hypothetical protein F17C11.11 [Caenorhabditis elegans] ref|NP_505790.1| F17C11.11 [Caenorhabditis elegans] 2.0E-58
blast NP_000111 epoxide hydrolase 1, microsomal (xenobiotic) [Homo sapiens] gb|AAB60649.1| epoxide hydrolase [Homo sapiens] emb|CAH71994.1| epoxide hydrolase 1, microsomal (xenobiotic) [Homo sapiens] gb|AAH08291.1| Epoxide hydrolase 1, microsomal (xenobiotic) [Homo sapiens] gb|AAH03567.1| Epoxide hydrolase 1, microsomal (xenobiotic) [Homo sapiens] gb|AAH95430.1| EPHX1 protein [Homo sapiens] gb|AAX81410.1| epoxide hydrolase 1, microsomal (xenobiotic) [Homo sapiens] sp|P07099|HYEP_HUMAN Epoxide hydrolase 1 (Microsomal epoxide hydrolase) (Epoxide hydratase) pir||A29939 epoxide hydrolase (EC 3.3.2.3) 1, microsomal - human emb|CAA30759.1| unnamed protein product [Homo sapiens] gb|AAA61305.1| epoxide hydrolase gb|AAA52390.1| epoxide hydrolase 6.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR010497 EMBL-EBI Epoxide hydrolase, N-terminal 1.1E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505811.1 1 235-252
C45B11.2 1 235-252
SNAP00000011920 1 5-24
GENEFINDER00000011924 1 275-292
Sequence
Target Sequence 
>C. ELEGANS:190464_AT
tgtcaaacccatttgtcaatccaacattttcaacgttcactctagcaaaatatgcattga
aagctatgggccaaaaggatgaagacagagaaaaccaggaaaaccgggaaaccggtaaag
acaatagagatcaaatgacagatttagcagactattttaaacaggacaaatttgcttatc
caactaattcacaagcttttggtgctgcttttcttaactctccatcaggaactgccaaat
atatcgaatctcggtggaagcaattatccacgttttttgcggaaactaatctaaatgaat
tgttcactatggatgaaatagcaactgaaatctatctctactggttaactgatactttac
cttctgctctcactattttagacagtagtttcaattttgaaagtgtgtggttgagttctc
aagtccggataccaactgctgtgagctattcaaaacaaacaccttggagatgctcgaaag
atatattggaagatagatatttgaatttgacaagaatatctgaattgccgaaaggtggaa
tgtttcatcatcttcaagacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCAAACCCATTTGTCAATCCAAC 576 557 1448 Antisense
ACATTTTCAACGTTCACTCTAGCAA 118 105 1471 Antisense
TTTTGGTGCTGCTTTTCTTAACTCT 439 677 1644 Antisense
TTAACTCTCCATCAGGAACTGCCAA 96 685 1661 Antisense
GCAACTGAAATCTATCTCTACTGGT 13 321 1768 Antisense
TTAACTGATACTTTACCTTCTGCTC 129 685 1792 Antisense
CCTTCTGCTCTCACTATTTTAGACA 663 269 1807 Antisense
GTTGAGTTCTCAAGTCCGGATACCA 637 437 1857 Antisense
TCCGGATACCAACTGCTGTGAGCTA 301 595 1871 Antisense
AACAAACACCTTGGAGATGCTCGAA 530 135 1901 Antisense
GAATGTTTCATCATCTTCAAGACGG 448 331 1985 Antisense
Sequence Source Affymetrix Proprietary Database