[Home] | [Total List]

[190461_at] glucose-1-dehydrogenase

Description F28H7.2 /REP_DB=WormBase Gene ID /WP=CE05752 /TR=Q19890 /GB=CAA96635.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glucose-1-dehydrogenase
Cluster 6grp_total > 18      4grp_total > 51      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.9
(-1.3)
A 		10.8
(3)
A 		9.5
(1.6)
A 		5.3
(-3)
A 		6
B 8.1
(-1)
A 		12.5
(3)
A 		9.5
(0.3)
A 		5.9
(-3)
A 		7
C 12.1
(2.6)
A 		12.4
(3)
A 		10.2
(0.4)
A 		7.4
(-3)
A 		5
avr 9
(-0.1) 		11.9
(3) 		9.7
(0.7) 		6.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 73.8
(3)
A 		18.3
(-2.1)
A 		8.2
(-3)
A 		9.6
(-2.9)
A 		16.3
(-2.3)
A 		15.4
(-2.3)
A 		66
B 49.8
(3)
A 		16.7
(-1.9)
A 		21
(-1.2)
A 		20.5
(-1.3)
A 		14.7
(-2.1)
A 		8.9
(-3)
A 		41
C 66.7
(3)
A 		17.1
(-1.9)
A 		21.5
(-1.5)
A 		12.3
(-2.4)
A 		6
(-3)
A 		7.1
(-2.9)
A 		61
avr 63.4
(3) 		17.4
(-2.2) 		16.9
(-2.3) 		14.1
(-2.6) 		12.3
(-2.8) 		10.5
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.5
(3)
A 		2.3
(2.3)
A 		2.5
(3)
A 		0.8
(-3)
A 		2
B 2.6
(1.3)
A 		3.1
(3)
A 		2.2
(0)
A 		1.3
(-3)
A 		2
C 4
(3)
A 		3.6
(2.1)
A 		3.6
(2.1)
A 		1.3
(-3)
A 		3
avr 3
(3) 		3
(3) 		2.8
(2.4) 		1.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.6
(3)
A 		6.5
(-0.6)
A 		1.8
(-3)
A 		2.4
(-2.7)
A 		4.9
(-1.4)
A 		3.8
(-2)
A 		12
B 17.3
(3)
A 		5.6
(-2)
A 		5.1
(-2.2)
A 		5.4
(-2.1)
A 		6
(-1.8)
A 		3.3
(-3)
A 		14
C 24.7
(3)
A 		5.2
(-2.1)
A 		5.5
(-2.1)
A 		2.5
(-2.8)
A 		1.9
(-3)
A 		2.4
(-2.9)
A 		23
avr 18.5
(3) 		5.8
(-2) 		4.1
(-2.6) 		3.4
(-2.9) 		4.3
(-2.6) 		3.2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12877
Sequence Type Exemplar sequence
Representative Public ID F28H7.2 NCBI
Target Description F28H7.2 /REP_DB=WormBase Gene ID /WP=CE05752 /TR=Q19890 /GB=CAA96635.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glucose-1-dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073341 NCBI Caenorhabditis elegans F28H7.2 (glucose-1-dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000038691 ENSEMBL cdna:SNAP chromosome:CEL140:V:10750529:10751523:1 11/11 None
GENEFINDER00000038701 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10750529:10751523:1 11/11 None
F28H7.2 ENSEMBL cdna:known chromosome:CEL140:V:10750529:10751523:1 gene:F28H7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10750528-10751523(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose-1-dehydrogenase
Ensembl F28H7.2
Entrez Gene 185096 Entrez gene
SwissProt Q19890 EMBL-EBI
WormBase CE05752 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259669_AT short-chain dehydrogenase/reductase (SDR) family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96635 Hypothetical protein F28H7.2 [Caenorhabditis elegans] ref|NP_505742.1| F28H7.2 [Caenorhabditis elegans] 1.0E-154
blast CAE64878 Hypothetical protein CBG09690 [Caenorhabditis briggsae] 1.0E-134
blast CAE61846 Hypothetical protein CBG05820 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-57
Sequence
Target Sequence 
>C. ELEGANS:190461_AT
atgacacaaaaagcacgcccacatctcgcaaaaactcaaggagaaatcgtaaatatttct
agcattggagctggaccagctgctcaagtagcatctccatattactcaattgcaaaagct
gcattagatcaatatactcgtacagctgctatcgatcttgttcctgaagggattcgagtt
aactccgtgagccctggagctgtatctactggattttcagctgtttcgagaggtctgaca
gaggaaaaatcaaaagctttctacgattatctcggtgctcaacgggaatgcattccacgt
ggattttgtgcagtaccagaagatattgcaaaagtgattgccttccttgccgatcgaaac
gcttccaattatattattggtcaaacaattgttgccgacggaggaacttcactcattctc
ggagctcatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACACAAAAAGCACGCCCACATC 327 45 394 Antisense
CGCCCACATCTCGCAAAAACTCAAG 59 257 409 Antisense
GACCAGCTGCTCAAGTAGCATCTCC 38 383 467 Antisense
CGTACAGCTGCTATCGATCTTGTTC 397 247 532 Antisense
GATTCGAGTTAACTCCGTGAGCCCT 295 433 564 Antisense
GGAGCTGTATCTACTGGATTTTCAG 595 519 589 Antisense
GATTTTCAGCTGTTTCGAGAGGTCT 563 429 605 Antisense
ACGATTATCTCGGTGCTCAACGGGA 278 93 656 Antisense
GCAAAAGTGATTGCCTTCCTTGCCG 271 319 721 Antisense
TTGCCGATCGAAACGCTTCCAATTA 665 701 740 Antisense
TTCACTCATTCTCGGAGCTCATGCT 62 687 801 Antisense
Sequence Source Affymetrix Proprietary Database