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[190459_at] D15Kz1 protein homolog

Description ZK1128.5 /REP_DB=WormBase Gene ID /WP=CE01687 /TR=Q09646 /GB=CAA87424.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=D15Kz1 protein homolog
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 57      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 353.6
(3)
P 		269.1
(-1.9)
P 		250.1
(-3)
P 		280.7
(-1.2)
P 		104
B 429.9
(3)
P 		280.5
(-2.9)
P 		290.6
(-2.5)
P 		277.7
(-3)
P 		152
C 385.1
(3)
P 		367.5
(2.3)
P 		298.4
(-0.6)
P 		239.2
(-3)
P 		146
avr 389.5
(3) 		305.7
(-1.1) 		279.7
(-2.3) 		265.9
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 500.2
(3)
P 		302.4
(-1.1)
P 		327.3
(-0.5)
P 		207.2
(-3)
P 		289.6
(-1.3)
P 		395.6
(0.9)
P 		293
B 383.2
(1)
P 		323.7
(-1.2)
P 		271.8
(-3)
P 		361.3
(0.2)
P 		300.5
(-2)
P 		440.5
(3)
P 		169
C 385.6
(0.3)
P 		377.3
(0)
P 		282
(-2.5)
P 		269.3
(-2.8)
P 		262.4
(-3)
P 		488.8
(3)
P 		226
avr 423
(2.3) 		334.5
(-1) 		293.7
(-2.5) 		279.3
(-3) 		284.2
(-2.8) 		441.6
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 128.8
(3)
P 		58.4
(-1.8)
P 		65.4
(-1.3)
P 		41.1
(-3)
P 		88
B 137.1
(3)
P 		69.3
(-2.2)
P 		67.3
(-2.4)
P 		59.2
(-3)
P 		78
C 127.5
(3)
P 		105.7
(1.5)
P 		104
(1.4)
P 		40.3
(-3)
P 		87
avr 131.1
(3) 		77.8
(-0.8) 		78.9
(-0.7) 		46.9
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 92.2
(1.3)
P 		107.6
(3)
P 		71.3
(-1)
P 		52.5
(-3)
P 		87.4
(0.8)
P 		96.3
(1.8)
P 		55
B 133.3
(1.1)
P 		107.7
(-0.5)
P 		66
(-3)
P 		95.7
(-1.2)
P 		122.1
(0.4)
P 		164.3
(3)
P 		98
C 142.9
(1.9)
P 		115.1
(0.3)
P 		71.8
(-2)
P 		54.2
(-3)
P 		84.9
(-1.3)
P 		163.6
(3)
P 		109
avr 122.8
(1.5) 		110.1
(0.5) 		69.7
(-2.8) 		67.5
(-3) 		98.1
(-0.5) 		141.4
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7019
Sequence Type Exemplar sequence
Representative Public ID ZK1128.5 NCBI
Target Description ZK1128.5 /REP_DB=WormBase Gene ID /WP=CE01687 /TR=Q09646 /GB=CAA87424.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=D15Kz1 protein homolog
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066849 NCBI Caenorhabditis elegans ZK1128.5 (ZK1128.5) mRNA, complete cds. 11/11 None
SNAP00000023589 ENSEMBL cdna:SNAP chromosome:CEL140:III:10120671:10122609:1 11/11 None
GENEFINDER00000023594 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10120671:10122609:1 11/11 None
ZK1128.5 ENSEMBL cdna:known chromosome:CEL140:III:10120669:10122811:1 gene:ZK1128.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10120666-10122605(+) 100.0 100.0
Public Domain and Genome References
Gene Title D15Kz1 protein homolog
Ensembl ZK1128.5
Entrez Gene 176426 Entrez gene
SwissProt Q09646 EMBL-EBI
WormBase CE01687 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258974_AT SWIB complex BAF60b domain-containing protein at
CANINE_2:CFA.18012.1.S1_S_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 isoform 1 cfa
CANINE_2:CFA.19337.1.S1_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 isoform 1 cfa
CANINE_2:CFAAFFX.8249.1.S1_S_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 isoform 1 cfa
CHICKEN:GGAAFFX.8276.3.S1_S_AT similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d3; Rsc6p; mammalian chromatin remodeling complex BRG1-associated factor 60C; Swp73-like protein; chromatin remodeling complex BAF60C subunit; SWI/SNF complex 60 kD... gga
HG-U95AV2:456_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HC-G110:456_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U133_PLUS_2:204099_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U133A:204099_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-FOCUS:204099_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U133A_2:204099_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HUGENEFL:U66619_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
U133_X3P:G4507086_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U95AV2:32565_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U133B:231144_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U133_PLUS_2:231144_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U95E:80155_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U95E:86404_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
HG-U95D:88650_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
U133_X3P:HS.71622.3.A1_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 hs
MOE430A:1418467_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MOUSE430_2:1418467_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MOUSE430A_2:1418467_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MG-U74BV2:108488_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MG-U74BV2:108911_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MG-U74BV2:164877_R_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MG-U74CV2:168558_F_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MG-U74CV2:170318_I_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 mm
MU19KSUBC:TC40353_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, mRNA (cDNA clone MGC:8018 IMAGE:3586276) mm
RG-U34C:RC_AI145891_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) rn
RAE230A:1371665_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) rn
RAT230_2:1371665_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) rn
RAE230A:1377473_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) rn
RAT230_2:1377473_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA87424 Hypothetical protein ZK1128.5 [Caenorhabditis elegans] ref|NP_499250.1| ZK1128.5 [Caenorhabditis elegans] 0.0
blast CAE65033 Hypothetical protein CBG09873 [Caenorhabditis briggsae] 0.0
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.2E-26
Sequence
Target Sequence 
>C. ELEGANS:190459_AT
ttgaagccctgtggcagtacatcaaaactcacaagcttcaagatccacaggatcgtgata
caatcaataatgatcttttcttggagcaatgttttggtgtgagcaagatgagatttatgg
agattcctcaaagacttcatcaactcttgcaacagcctgatcctttagtcttgaatcata
ttattcagcggcctgatgatggtcaagataaaacttctgcttgttatgatattgatgtcg
agctcgaggatccagtcaaacaacaaatggcaaatttcgttcacaatcaaacaaatgcga
acgacattcaactacttgatcaaaaaatattcgacttggtagatcaaataaacgagatga
agctgcgtcgtgatttcttccttcgtttctcgaacgagcccagtggattcatcaagaaat
gggttgtaagccagaattctgacttgaagactttaacagaatcaagtggtgatggagaat
ccgatcgttatgcgacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAGCCCTGTGGCAGTACATCAA 95 705 749 Antisense
AACTCACAAGCTTCAAGATCCACAG 59 141 774 Antisense
GAGATTCCTCAAAGACTTCATCAAC 516 397 868 Antisense
ACTTCATCAACTCTTGCAACAGCCT 616 103 882 Antisense
CAACAGCCTGATCCTTTAGTCTTGA 412 189 898 Antisense
TTCAGCGGCCTGATGATGGTCAAGA 192 687 932 Antisense
GTCGAGCTCGAGGATCCAGTCAAAC 20 475 985 Antisense
ATGCGAACGACATTCAACTACTTGA 242 41 1043 Antisense
AGATGAAGCTGCGTCGTGATTTCTT 624 67 1103 Antisense
TTTCTCGAACGAGCCCAGTGGATTC 39 669 1134 Antisense
GAGAATCCGATCGTTATGCGACAAC 441 391 1223 Antisense
Sequence Source Affymetrix Proprietary Database