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[190458_at] Yeast SNF7 like protein

Description T24B8.2 /REP_DB=WormBase Gene ID /WP=CE03710 /TR=Q22718 /GB=CAA92759.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Yeast SNF7 like protein
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 93      6grp_total > 75      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 198.7
(-3)
P 		318.6
(0.1)
P 		267.6
(-1.2)
P 		433.8
(3)
P 		235
B 189.9
(-3)
P 		220.8
(-1.9)
P 		249.2
(-0.9)
P 		356.8
(3)
P 		167
C 198.1
(-3)
P 		271.5
(0.7)
P 		317.4
(3)
P 		312.5
(2.8)
P 		119
avr 195.6
(-3) 		270.3
(-0.4) 		278.1
(-0.1) 		367.7
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 228.4
(-3)
P 		240.6
(-2.7)
P 		392.8
(1)
P 		382.5
(0.7)
P 		406.5
(1.3)
P 		476.2
(3)
P 		248
B 207.9
(-3)
P 		287.1
(-1.8)
P 		428.8
(0.3)
P 		432.7
(0.4)
P 		337.1
(-1.1)
P 		607
(3)
P 		399
C 154.1
(-3)
P 		267.9
(-1.6)
P 		316.6
(-1)
P 		392.8
(-0.1)
P 		269.1
(-1.6)
P 		650.2
(3)
P 		496
avr 196.8
(-3) 		265.2
(-1.9) 		379.4
(-0.1) 		402.7
(0.2) 		337.6
(-0.8) 		577.8
(3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 72.4
(3)
P 		69.2
(0.8)
P 		70
(1.4)
P 		63.5
(-3)
P 		9
B 60.5
(-1.3)
P 		54.5
(-3)
P 		57.7
(-2.1)
P 		76
(3)
P 		22
C 65.6
(-1.7)
P 		78.1
(-0.4)
P 		110.6
(3)
P 		52.7
(-3)
P 		58
avr 66.2
(-2.2) 		67.3
(-1.7) 		79.4
(3) 		64.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 42.1
(-3)
P 		85.6
(0.2)
P 		85.5
(0.2)
P 		97
(1.1)
P 		122.7
(3)
P 		116
(2.5)
P 		81
B 72.4
(-3)
P 		95.6
(-2.1)
P 		104.1
(-1.8)
P 		114.6
(-1.4)
P 		137
(-0.5)
P 		226.3
(3)
P 		154
C 57.1
(-3)
P 		81.8
(-2.1)
P 		80.6
(-2.1)
P 		79
(-2.2)
P 		87.1
(-1.9)
P 		217.7
(3)
P 		161
avr 57.2
(-3) 		87.7
(-1.6) 		90.1
(-1.5) 		96.9
(-1.2) 		115.6
(-0.3) 		186.7
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3152
Sequence Type Exemplar sequence
Representative Public ID T24B8.2 NCBI
Target Description T24B8.2 /REP_DB=WormBase Gene ID /WP=CE03710 /TR=Q22718 /GB=CAA92759.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Yeast SNF7 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063532 NCBI Caenorhabditis elegans T24B8.2 (T24B8.2) mRNA, complete cds. 11/11 None
SNAP00000039887 ENSEMBL cdna:SNAP chromosome:CEL140:II:9054889:9056354:1 11/11 None
GENEFINDER00000039898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9054889:9056354:1 11/11 None
T24B8.2 ENSEMBL cdna:known chromosome:CEL140:II:9054888:9056354:1 gene:T24B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9054885-9056351(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast SNF7 like protein
Ensembl T24B8.2
Entrez Gene 174442 Entrez gene
SwissProt Q22718 EMBL-EBI
WormBase CE03710 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587038_AT similar to CHMP family, member 7 cfa
CANINE_2:CFA.6953.1.S1_AT similar to CHMP family, member 7 cfa
CANINE_2:CFAAFFX.14531.1.S1_AT similar to CHMP family, member 7 cfa
CANINE_2:CFAAFFX.14531.1.S1_S_AT similar to CHMP family, member 7 cfa
DROSOPHILA_2:1631723_AT dm
DROSGENOME1:152177_AT dm
CHICKEN:GGA.19416.1.S1_S_AT CHMP family, member 7 gga
HG-U95AV2:34872_AT CHMP family, member 7 hs
HU35KSUBA:RC_AA232576_AT CHMP family, member 7 hs
U133_X3P:HS.5019.0.S1_3P_AT CHMP family, member 7 hs
HG-U133A_2:212313_AT CHMP family, member 7 hs
HG-U133_PLUS_2:212313_AT CHMP family, member 7 hs
HG-U133A:212313_AT CHMP family, member 7 hs
HG-U95AV2:34871_AT CHMP family, member 7 hs
MU11KSUBA:AA712070_AT CHMP family, member 7 mm
MG-U74AV2:101392_AT CHMP family, member 7 mm
MG-U74AV2:161613_AT CHMP family, member 7 mm
MOE430A:1451300_A_AT CHMP family, member 7 mm
MOUSE430A_2:1451300_A_AT CHMP family, member 7 mm
MOUSE430_2:1451300_A_AT CHMP family, member 7 mm
MOE430B:1430936_AT CHMP family, member 7 mm
MOUSE430_2:1430936_AT CHMP family, member 7 mm
MU19KSUBB:TC34191_AT CHMP family, member 7, mRNA (cDNA clone MGC:36667 IMAGE:5367653) mm
Protein Similarities
Method ID Description E-Value
blast CAA92759 Hypothetical protein T24B8.2 [Caenorhabditis elegans] ref|NP_495933.1| T24B8.2 [Caenorhabditis elegans] 0.0
blast CAE59793 Hypothetical protein CBG03253 [Caenorhabditis briggsae] 0.0
blast AAH66676 CHMP family, member 7 [Danio rerio] 5.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.1E-58
Sequence
Target Sequence 
>C. ELEGANS:190458_AT
gcagacgccagtgtcgttgatatccggaaagcaatgaataagttggatcgagagattcaa
caacttgaacagaaagttaagaagtatgacgaacagtgccgagcttgcttgcggacaggc
gacaaaggacgtgctcagaacttccttcgacagagaaagcgtgccgaaaaagacatcgct
gacaaagatgttcagtatcagaaactgctcacaatgcttcatcaaatttcttctgcaaaa
aacaacaaggacgttctgcaggcctataaatctggaactgctgctttcaaagcaacattg
gcgaggcaaggattgtctcctgataaaatacacgagacgatggacgatgtcgttaattca
atggacgagtacaaggaaatcgaagaagcaatttcgtctccgtttgttaatgctaatgga
tttaatgatgccgacttagagcaggagttggaagatcttatcagtgacaacaagaaaaat
gagtcagtgcatctcccagaagctccaaccaacagattcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGACGCCAGTGTCGTTGATATCC 353 313 652 Antisense
CGAACAGTGCCGAGCTTGCTTGCGG 166 253 741 Antisense
GCGGACAGGCGACAAAGGACGTGCT 228 287 762 Antisense
TGCTCAGAACTTCCTTCGACAGAGA 47 581 783 Antisense
CAATGCTTCATCAAATTTCTTCTGC 304 183 863 Antisense
GGACGTTCTGCAGGCCTATAAATCT 253 523 900 Antisense
AAATCTGGAACTGCTGCTTTCAAAG 128 119 919 Antisense
GGCGAGGCAAGGATTGTCTCCTGAT 54 543 951 Antisense
GAAGAAGCAATTTCGTCTCCGTTTG 313 339 1033 Antisense
AATGAGTCAGTGCATCTCCCAGAAG 349 165 1129 Antisense
GAAGCTCCAACCAACAGATTCGGAC 343 343 1150 Antisense
Sequence Source Affymetrix Proprietary Database