[Home] | [Total List]

[190454_at] Glycosyl transferases

Description Y45F10D.3 /REP_DB=WormBase Gene ID /WP=CE16642 /TR=O45947 /GB=CAA16378.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 508
(3)
P 		412.8
(-2.5)
P 		423.6
(-1.8)
P 		403.4
(-3)
P 		105
B 424.8
(0.7)
P 		377.7
(-1.1)
P 		325.7
(-3)
P 		486.4
(3)
P 		161
C 401.3
(2.6)
P 		277.7
(-3)
P 		411.1
(3)
P 		400.1
(2.5)
P 		133
avr 444.7
(3) 		356.1
(-3) 		386.8
(-0.9) 		430
(2) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 493.6
(0.5)
P 		465.4
(-0.2)
P 		353.6
(-3)
P 		474.2
(0)
P 		432.8
(-1)
P 		594.2
(3)
P 		241
B 475.6
(-0.6)
P 		390.5
(-3)
P 		448.8
(-1.4)
P 		486.1
(-0.3)
P 		501.4
(0.1)
P 		603.1
(3)
P 		213
C 418.2
(-3)
P 		490.1
(-1.2)
P 		495.3
(-1.1)
P 		567.7
(0.7)
P 		452.2
(-2.2)
P 		661.4
(3)
P 		243
avr 462.5
(-2) 		448.7
(-2.5) 		432.6
(-3) 		509.3
(-0.5) 		462.1
(-2.1) 		619.6
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 185
(3)
P 		89.6
(-1.5)
P 		110.7
(-0.5)
P 		59.1
(-3)
P 		126
B 135.5
(3)
P 		93.3
(-1.2)
P 		75.5
(-3)
P 		103.6
(-0.2)
P 		60
C 132.8
(2.2)
P 		79.8
(-2)
P 		143.3
(3)
P 		67.5
(-3)
P 		76
avr 151.1
(3) 		87.6
(-2.1) 		109.8
(-0.3) 		76.7
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 91
(-2.1)
P 		165.5
(3)
P 		77
(-3)
P 		120.3
(-0.1)
P 		130.6
(0.6)
P 		144.7
(1.6)
P 		89
B 165.5
(-0.1)
P 		130
(-1.9)
P 		109
(-3)
P 		128.8
(-2)
P 		203.7
(1.9)
P 		224.9
(3)
P 		116
C 155
(-0.7)
P 		149.6
(-1)
P 		126.1
(-2.3)
P 		114.2
(-3)
P 		146.3
(-1.2)
P 		221.4
(3)
P 		107
avr 137.2
(-0.9) 		148.4
(-0.1) 		104
(-3) 		121.1
(-1.9) 		160.2
(0.6) 		197
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10208
Sequence Type Exemplar sequence
Representative Public ID Y45F10D.3 NCBI
Target Description Y45F10D.3 /REP_DB=WormBase Gene ID /WP=CE16642 /TR=O45947 /GB=CAA16378.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070255 NCBI Caenorhabditis elegans Y45F10D.3 (Y45F10D.3) mRNA, complete cds. 11/11 None
SNAP00000025705 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13779308:13782187:1 11/11 None
GENEFINDER00000025727 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13779308:13782187:1 11/11 None
Y45F10D.3 ENSEMBL cdna:known chromosome:CEL140:IV:13778835:13782330:1 gene:Y45F10D.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13779070-13782193(+) 100.0 100.0
Public Domain and Genome References
Gene Title Glycosyl transferases
Ensembl Y45F10D.3
Entrez Gene 178343 Entrez gene
SwissProt O45947 EMBL-EBI
WormBase CE16642 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628296_AT polypeptide GalNAc transferase 4 dm
DROSGENOME1:145714_AT polypeptide GalNAc transferase 4 dm
Protein Similarities
Method ID Description E-Value
blast CAA16378 Hypothetical protein Y45F10D.3 [Caenorhabditis elegans] ref|NP_502656.1| Y45F10D.3 [Caenorhabditis elegans] 0.0
blast O45947 Putative polypeptide N-acetylgalactosaminyltransferase 10 (Protein-UDP acetylgalactosaminyltransferase 10) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10) (pp-GaNTase 10) 0.0
blast CAE74592 Hypothetical protein CBG22373 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.4E-6
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 5.5E-8
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.0E-30
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.4E-6
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 5.5E-8
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.0E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502656.1 1 75-94
Y45F10D.3 1 75-94
SNAP00000025705 1 13-32
GENEFINDER00000025727 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:190454_AT
aggagacactttacaaacatcgccccggagttggaaacgcagatgccggagatttgaagc
ttatgaaaggaatcagagagaagcttcagtgcaaatcatttgattggttcatgaaagaaa
tcgcatttgatcaggacaaatactatccagcagtcgaaccgaaagcttctgccgaaggag
aaattagaaatgtcggcacaaacttttgtattgatactcaattcaaagaacaaaatcaac
gattcggacttcgaaaatgcacatctgatgataaggatggtggcggggagcaggatttga
gattgacgagatggcatgatatccgaccgaagggacggaaaatctgctttgattgctcaa
cgagtgtcgataaggctcctgttattctttttgattgtcactcaatgaaaggaaaccaac
tgttcaaataccgggtggctcagaagcaaatctaccatccaatttccggtcaatgtctga
cggcagacgagaatggcaaaggatttttgcacatgaaaaagtgtgatagttcatctgatc
tccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGACACTTTACAAACATCGCCC 179 57 1448 Antisense
TCGCCCCGGAGTTGGAAACGCAGAT 38 597 1467 Antisense
AATACTATCCAGCAGTCGAACCGAA 82 173 1586 Antisense
TCGAACCGAAAGCTTCTGCCGAAGG 91 601 1601 Antisense
GAGATGGCATGATATCCGACCGAAG 655 395 1755 Antisense
AATCTGCTTTGATTGCTCAACGAGT 181 169 1788 Antisense
AACGAGTGTCGATAAGGCTCCTGTT 231 145 1806 Antisense
GGCTCCTGTTATTCTTTTTGATTGT 604 539 1821 Antisense
AATCTACCATCCAATTTCCGGTCAA 654 169 1896 Antisense
TTCCGGTCAATGTCTGACGGCAGAC 500 697 1911 Antisense
GTGTGATAGTTCATCTGATCTCCAA 683 487 1968 Antisense
Sequence Source Affymetrix Proprietary Database