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[190453_at] UDP-sugartransferase

Description T04H1.7 /REP_DB=WormBase Gene ID /WP=CE13179 /TR=SW:Q22180 /GB=CAB01584.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-sugartransferase
Cluster 6grp_high1_10_10 > 64      4grp_high_8_8 > 12      6grp_total > 55      4grp_total > 20      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 136.3
(-0.4)
P 		79.7
(-2.2)
P 		52.8
(-3)
A 		242.8
(3)
P 		190
B 155.3
(-0.2)
P 		140.4
(-0.7)
P 		72.4
(-3)
A 		252.4
(3)
P 		180
C 163.4
(-0.5)
P 		131.9
(-1.3)
P 		70.7
(-3)
P 		290.9
(3)
P 		220
avr 151.7
(-0.4) 		117.3
(-1.4) 		65.3
(-3) 		262
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 99.8
(-2.1)
P 		91.7
(-3)
P 		137.7
(2.4)
P 		143.2
(3)
P 		101
(-1.9)
P 		143.1
(3)
P 		52
B 129.2
(-1.1)
P 		148.9
(0.1)
P 		197.4
(3)
P 		138.6
(-0.5)
P 		96.5
(-3)
P 		171.2
(1.4)
P 		101
C 151.9
(3)
P 		147.1
(2.5)
P 		119.7
(-0)
P 		88.4
(-3)
A 		112.7
(-0.7)
P 		129.1
(0.8)
P 		64
avr 127
(-0.1) 		129.2
(0.2) 		151.6
(3) 		123.4
(-0.5) 		103.4
(-3) 		147.8
(2.5) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 49.6
(3)
P 		17.3
(-2.4)
P 		13.8
(-3)
A 		35.5
(0.6)
P 		36
B 49.5
(2.3)
P 		34.7
(-0.1)
P 		16.8
(-3)
A 		53.8
(3)
P 		37
C 54.1
(3)
P 		37.9
(-0.3)
P 		24.6
(-3)
P 		49
(2)
P 		30
avr 51.1
(3) 		30
(-0.9) 		18.4
(-3) 		46.1
(2.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 18.4
(-3)
P 		32.6
(1.8)
P 		30
(0.9)
P 		36.3
(3)
P 		30.5
(1.1)
P 		34.8
(2.5)
P 		18
B 45
(-1.2)
P 		49.6
(-0.2)
P 		47.9
(-0.5)
P 		36.7
(-3)
P 		39.2
(-2.4)
P 		63.9
(3)
P 		27
C 56.3
(3)
P 		44.9
(1.2)
P 		30.5
(-1)
P 		17.8
(-3)
A 		36.5
(-0.1)
P 		43.2
(1)
P 		39
avr 39.9
(0.4) 		42.4
(1.3) 		36.1
(-1) 		30.3
(-3) 		35.4
(-1.2) 		47.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13490
Sequence Type Exemplar sequence
Representative Public ID T04H1.7 NCBI
Target Description T04H1.7 /REP_DB=WormBase Gene ID /WP=CE13179 /TR=SW:Q22180 /GB=CAB01584.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-sugartransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073672 NCBI Caenorhabditis elegans T04H1.7 (UDP-sugartransferase) mRNA, complete cds. 11/11 None
SNAP00000026404 ENSEMBL cdna:SNAP chromosome:CEL140:V:12258231:12263402:1 11/11 None
GENEFINDER00000026410 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12258327:12264620:1 11/11 None
T04H1.7 ENSEMBL cdna:known chromosome:CEL140:V:12258210:12261381:1 gene:T04H1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12259290-12261084(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-sugartransferase
Gene Symbol ugt-55
Ensembl T04H1.7
Entrez Gene 188072 Entrez gene
SwissProt Q22180 EMBL-EBI
WormBase CE31984 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01584 Hypothetical protein T04H1.7 [Caenorhabditis elegans] ref|NP_506073.2| T04H1.7 [Caenorhabditis elegans] sp|Q22180|UGT11_CAEEL Putative UDP-glucuronosyltransferase UGT11 precursor (UDPGT) 0.0
blast CAB01585 Hypothetical protein T04H1.8 [Caenorhabditis elegans] ref|NP_506074.2| T04H1.8 [Caenorhabditis elegans] sp|Q22181|UGT12_CAEEL Putative UDP-glucuronosyltransferase UGT12 precursor (UDPGT) 0.0
blast CAE75431 Hypothetical protein CBG23424 [Caenorhabditis briggsae] 0.0
blast CAE75431 Hypothetical protein CBG23424 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-9
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-9
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-9
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506073.2 1 488-507
T04H1.7 1 488-507
SNAP00000026404 2 5-27,123-145
GENEFINDER00000026410 2 91-113,1052-1074
Sequence
Target Sequence 
>C. ELEGANS:190453_AT
tagcagctttgaaaatctcctccgatttagcaatctaatgtttttgaacacccatgagct
cgcagatgctcatcgaccatggagcaggagagttcatgaaattggaggaatatcctttaa
atttccaatgccactgaaaaacgaatatatcaatctattcaataaatataattccataat
ccttgtgtcattcggaactacaacaccttcgtttttgatgcccgagaaatataaaaatac
gttaataaatactttccaaaggtttcctgactttcttttcatttggaaatatgagaaaga
cgacgagttcacacagaaaaataagaaagggaatgtggttttcaagaagtttttgcctca
agttgatttattagaatcaagaaaaatcaaattattcatcacacatggcggtcagaatag
tcttcttgaaacttttcattcaaacactcgtactctgataactcccttatttggtgatca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCAGCTTTGAAAATCTCCTCCGA 594 651 717 Antisense
ATGTTTTTGAACACCCATGAGCTCG 19 49 754 Antisense
TGAGCTCGCAGATGCTCATCGACCA 361 569 771 Antisense
ATCCTTTAAATTTCCAATGCCACTG 510 37 828 Antisense
ATTCCATAATCCTTGTGTCATTCGG 446 7 887 Antisense
GTCATTCGGAACTACAACACCTTCG 210 467 903 Antisense
CACCTTCGTTTTTGATGCCCGAGAA 414 199 920 Antisense
GTTTCCTGACTTTCTTTTCATTTGG 424 451 978 Antisense
TATTCATCACACATGGCGGTCAGAA 26 663 1109 Antisense
CAAACACTCGTACTCTGATAACTCC 519 191 1157 Antisense
ATAACTCCCTTATTTGGTGATCAAC 249 25 1174 Antisense
Sequence Source Affymetrix Proprietary Database