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[190452_at]

Description C02F5.3 /REP_DB=WormBase Gene ID /WP=CE00039 /TR=SW:P34280 /GB=AAA27918.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 315.6
(-2.6)
P 		303.7
(-3)
P 		332.3
(-1.9)
P 		465.7
(3)
P 		162
B 362.7
(-1.1)
P 		337.7
(-1.6)
P 		278.7
(-3)
P 		539.1
(3)
P 		260
C 353
(-2.6)
P 		375.9
(-1.5)
P 		343.3
(-3)
P 		476.7
(3)
P 		133
avr 343.8
(-2.1) 		339.1
(-2.3) 		318.1
(-3) 		493.8
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 355.9
(-0.6)
P 		308.7
(-3)
P 		420.1
(2.7)
P 		377.5
(0.5)
P 		401.2
(1.8)
P 		425
(3)
P 		116
B 316.2
(-3)
P 		351.2
(-2.3)
P 		386.2
(-1.6)
P 		389.4
(-1.5)
P 		466.1
(-0)
P 		617.4
(3)
P 		301
C 284.2
(-3)
P 		360.6
(-1.6)
P 		303
(-2.7)
P 		402.4
(-0.8)
P 		437.7
(-0.2)
P 		612.4
(3)
P 		328
avr 318.8
(-3) 		340.2
(-2.4) 		369.8
(-1.7) 		389.8
(-1.2) 		435
(-0) 		551.6
(3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 114.9
(3)
P 		65.9
(-3)
P 		86.9
(-0.4)
P 		68.2
(-2.7)
P 		49
B 115.7
(3)
P 		83.4
(-0.8)
P 		64.6
(-3)
P 		114.9
(2.9)
P 		51
C 116.9
(2.6)
P 		108.1
(1.2)
P 		119.6
(3)
P 		80.4
(-3)
P 		39
avr 115.8
(3) 		85.8
(-3) 		90.4
(-2.1) 		87.8
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 65.6
(-3)
P 		109.8
(1.8)
P 		91.5
(-0.2)
P 		95.7
(0.3)
P 		121.1
(3)
P 		103.5
(1.1)
P 		56
B 110
(-2.3)
P 		116.9
(-2)
P 		93.8
(-3)
P 		103.1
(-2.6)
P 		189.4
(1.2)
P 		230.2
(3)
P 		136
C 105.4
(-1.7)
P 		110
(-1.5)
P 		77.1
(-3)
P 		80.9
(-2.8)
P 		141.6
(0)
P 		205
(3)
P 		128
avr 93.7
(-2.6) 		112.2
(-1.4) 		87.5
(-3) 		93.2
(-2.6) 		150.7
(1.1) 		179.6
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7409
Sequence Type Exemplar sequence
Representative Public ID C02F5.3 NCBI
Target Description C02F5.3 /REP_DB=WormBase Gene ID /WP=CE00039 /TR=SW:P34280 /GB=AAA27918.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025967 NCBI Caenorhabditis elegans C02F5.13 (C02F5.13) mRNA, complete cds. 11/11 None
SNAP00000031511 ENSEMBL cdna:SNAP chromosome:CEL140:III:8245807:8248569:1 10/11 None
GENEFINDER00000031522 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8247267:8248569:1 11/11 None
C02F5.13 ENSEMBL cdna:known chromosome:CEL140:III:8247267:8248569:1 gene:C02F5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8245802-8248565(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.13
Entrez Gene 3565859 Entrez gene
SwissProt P61228 EMBL-EBI
WormBase CE36093 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604999_S_AT similar to TM2 domain containing 2 isoform a cfa
CANINE_2:CFA.2002.1.S1_AT similar to TM2 domain containing 2 isoform a cfa
CANINE_2:CFAAFFX.9745.1.S1_S_AT similar to TM2 domain containing 2 isoform a cfa
DROSOPHILA_2:1634839_AT dm
DROSGENOME1:145032_AT dm
CHICKEN:GGA.7778.1.S1_AT TM2 domain containing 2 gga
HG-U133_PLUS_2:224413_S_AT TM2 domain containing 2 hs
HG-U133B:224413_S_AT TM2 domain containing 2 hs
HU35KSUBA:RC_AA041535_AT TM2 domain containing 2 hs
HU35KSUBA:HUM_ALU_AT TM2 domain containing 2 hs
HU35KSUBB:HUM_ALU_AT TM2 domain containing 2 hs
HU35KSUBC:HUM_ALU_AT TM2 domain containing 2 hs
HU35KSUBD:HUM_ALU_AT TM2 domain containing 2 hs
HUGENEFL:HUM_ALU_AT TM2 domain containing 2 hs
HC-G110:HUM_ALU_AT TM2 domain containing 2 hs
HU35KSUBD:RC_N27118_AT TM2 domain containing 2 hs
U133_X3P:G13625460_3P_S_AT TM2 domain containing 2 hs
HG-U95B:46264_AT TM2 domain containing 2 hs
HG-U95D:69129_AT TM2 domain containing 2 hs
MOUSE430A_2:1439454_X_AT TM2 domain containing 2 mm
MOE430A:1439454_X_AT TM2 domain containing 2 mm
MOUSE430_2:1439454_X_AT TM2 domain containing 2 mm
MOUSE430A_2:1456663_X_AT TM2 domain containing 2 mm
MOE430A:1456663_X_AT TM2 domain containing 2 mm
MOUSE430_2:1456663_X_AT TM2 domain containing 2 mm
MG-U74AV2:98920_G_AT TM2 domain containing 2 mm
MG-U74AV2:98921_AT TM2 domain containing 2 mm
MG-U74BV2:165343_I_AT TM2 domain containing 2 mm
MOE430A:1433473_X_AT TM2 domain containing 2 mm
MOUSE430A_2:1433473_X_AT TM2 domain containing 2 mm
MOUSE430_2:1433473_X_AT TM2 domain containing 2 mm
MOE430A:1439235_X_AT TM2 domain containing 2 mm
MOUSE430A_2:1439235_X_AT TM2 domain containing 2 mm
MOUSE430_2:1439235_X_AT TM2 domain containing 2 mm
MOE430A:1439234_A_AT TM2 domain containing 2 mm
MOUSE430A_2:1439234_A_AT TM2 domain containing 2 mm
MOUSE430_2:1439234_A_AT TM2 domain containing 2 mm
MOE430A:1451134_A_AT TM2 domain containing 2 mm
MOUSE430A_2:1451134_A_AT TM2 domain containing 2 mm
MOUSE430_2:1451134_A_AT TM2 domain containing 2 mm
MOE430A:1437725_X_AT TM2 domain containing 2 mm
MOUSE430A_2:1437725_X_AT TM2 domain containing 2 mm
MOUSE430_2:1437725_X_AT TM2 domain containing 2 mm
MOE430A:1438181_X_AT TM2 domain containing 2 mm
MOUSE430A_2:1438181_X_AT TM2 domain containing 2 mm
MOUSE430_2:1438181_X_AT TM2 domain containing 2 mm
MG-U74AV2:98919_AT TM2 domain containing 2 (Tm2d2), mRNA mm
MU19KSUBB:TC30525_AT TM2 domain containing 2 (Tm2d2), mRNA mm
MU19KSUBB:TC30525_G_AT TM2 domain containing 2 (Tm2d2), mRNA mm
MU19KSUBB:TC30526_AT TM2 domain containing 2 (Tm2d2), mRNA mm
MU11KSUBB:W41756_AT TM2 domain containing 2 (Tm2d2), mRNA mm
RG-U34C:RC_AA818129_AT similar to RIKEN cDNA 2410018G23 (predicted) rn
RAE230A:1398984_AT similar to RIKEN cDNA 2410018G23 (predicted) rn
RAT230_2:1398984_AT similar to RIKEN cDNA 2410018G23 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR25659 Hypothetical protein C02F5.3 [Caenorhabditis elegans] ref|NP_498808.2| C02F5.3 [Caenorhabditis elegans] sp|P34280|YKK3_CAEEL Hypothetical GTP-binding protein C02F5.3 in chromosome III 0.0
blast CAE56931 Hypothetical protein CBG24776 [Caenorhabditis briggsae] 0.0
blast XP_788099 PREDICTED: similar to developmentally regulated GTP binding protein 2 [Strongylocentrotus purpuratus] 1.0E-155
blast AAR25658 Hypothetical protein C02F5.13 [Caenorhabditis elegans] ref|NP_001021138.1| C02F5.13 [Caenorhabditis elegans] sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chromosome III 1.0E-125
blast CAE56930 Hypothetical protein CBG24775 [Caenorhabditis briggsae] 3.0E-94
blast XP_391919 PREDICTED: similar to GA10761-PA [Apis mellifera] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004095 EMBL-EBI TGS domain 6.3E-28
Pfam IPR007829 EMBL-EBI TM2 3.8E-18
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 1.0E-126
Pfam IPR007829 EMBL-EBI TM2 3.8E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021138.1 2 139-161,176-198
C02F5.13 2 139-161,176-198
SNAP00000031511 2 475-497,518-537
GENEFINDER00000031522 2 139-161,176-198
Sequence
Target Sequence 
>C. ELEGANS:190452_AT
tgatcccattctttctcgtaaatatttcaaacggaaacaacgaatttcgaatagaatttg
aatatccaaataatgaaaagtcggaaaaatgctttgattcatcaaaggaaaatgacttat
tagatcttttctatgtatcaacaaatccacttggacctgtcgtcgaatgtcgttttcttg
agaattccttcattttatgtgaggatccagttccactctacggccctggacaaacgggac
agcaaccagcaaatgagagttttcgaaatgaaggaaaatgtctgaaaatgggtggataca
gagcagaggacgttgagttcacgaatgtcaagtgccgagttcttccgtgtattgaatgtc
atggaccaagaacgtttacaaagtcaacaccttgtataatatacaatggtcactactttc
tcacaactcttctgtattccatttttctcggtgtggttgctgtcgaccgtttttgcctgg
gatattctgcaatggctgtcggaaaactaatgactttgggtggatttggaatctggtgga
ttgtcgatatattcttactggtacttggagtactcggacccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCCATTCTTTCTCGTAAATAT 97 567 1121 Antisense
CAAATCCACTTGGACCTGTCGTCGA 629 193 1262 Antisense
GACCTGTCGTCGAATGTCGTTTTCT 551 381 1274 Antisense
ATGTGAGGATCCAGTTCCACTCTAC 520 49 1317 Antisense
TACGGCCCTGGACAAACGGGACAGC 306 75 1339 Antisense
GAATGTCAAGTGCCGAGTTCTTCCG 516 329 1443 Antisense
ATACAATGGTCACTACTTTCTCACA 257 25 1521 Antisense
TACTTTCTCACAACTCTTCTGTATT 698 645 1534 Antisense
TTCTCGGTGTGGTTGCTGTCGACCG 44 691 1565 Antisense
TGGGATATTCTGCAATGGCTGTCGG 117 555 1598 Antisense
TGGTACTTGGAGTACTCGGACCCGC 670 549 1679 Antisense
Sequence Source Affymetrix Proprietary Database