[Home] | [Total List]

[190451_at] tyrosine-protein kinase

Description F59F5.3 /REP_DB=WormBase Gene ID /WP=CE03444 /TR=Q21046 /GB=CAA90657.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_high1_10_10 > 71      4grp_high_8_8 > 32      6grp_total > 71      4grp_total > 38      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 107.6
(3)
P 		46.4
(-2.1)
P 		36.1
(-3)
P 		42.4
(-2.5)
P 		72
B 65.5
(3)
P 		52.3
(0.3)
P 		35.7
(-3)
A 		48.3
(-0.5)
P 		30
C 77.5
(3)
P 		56.5
(-3)
P 		58.2
(-2.5)
P 		66.5
(-0.1)
P 		21
avr 83.5
(3) 		51.7
(-1.7) 		43.3
(-3) 		52.4
(-1.6) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 62.4
(-3)
M 		79.2
(-1.9)
P 		104.1
(-0.3)
P 		155.3
(3)
P 		107.4
(-0.1)
P 		71.4
(-2.4)
P 		93
B 60.9
(-2.6)
P 		95.6
(-0)
P 		128.9
(2.5)
P 		135.7
(3)
P 		117.1
(1.6)
P 		56.1
(-3)
P 		80
C 62.8
(-3)
P 		127.6
(-0.2)
P 		101.3
(-1.3)
P 		199.3
(3)
P 		109.3
(-1)
P 		73.4
(-2.5)
P 		137
avr 62
(-3) 		100.8
(-0.7) 		111.4
(-0.1) 		163.4
(3) 		111.3
(-0.1) 		67
(-2.7) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 39.2
(3)
P 		10.1
(-2.3)
P 		9.4
(-2.4)
P 		6.2
(-3)
P 		33
B 20.9
(3)
P 		12.9
(-0.8)
P 		8.3
(-3)
A 		10.3
(-2)
P 		13
C 25.7
(3)
P 		16.3
(-0.9)
P 		20.3
(0.8)
P 		11.2
(-3)
P 		15
avr 28.6
(3) 		13.1
(-1.8) 		12.7
(-1.9) 		9.2
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.5
(-3)
M 		28.2
(0.6)
P 		22.7
(-0.6)
P 		39.4
(3)
P 		32.4
(1.5)
P 		17.4
(-1.7)
P 		28
B 21.2
(-2.9)
P 		31.8
(-0.6)
P 		31.3
(-0.7)
P 		35.9
(0.4)
P 		47.6
(3)
P 		20.9
(-3)
P 		27
C 23.3
(-3)
P 		38.9
(2.6)
P 		25.8
(-2.1)
P 		40.1
(3)
P 		35.4
(1.3)
P 		24.6
(-2.5)
P 		17
avr 18.7
(-3) 		33
(1.3) 		26.6
(-0.6) 		38.5
(3) 		38.5
(3) 		21
(-2.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16677
Sequence Type Exemplar sequence
Representative Public ID F59F5.3 NCBI
Target Description F59F5.3 /REP_DB=WormBase Gene ID /WP=CE03444 /TR=Q21046 /GB=CAA90657.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077364(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077364 NCBI Caenorhabditis elegans F59F5.3 (F59F5.3) mRNA, complete cds. 9/11 None
GENEFINDER00000005601 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10537153:10542312:-1 9/11 None
F59F5.3 ENSEMBL cdna:known chromosome:CEL140:X:10537067:10542312:-1 gene:F59F5.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10537272-10542312(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl F59F5.3
Entrez Gene 186634 Entrez gene
SwissProt Q21046 EMBL-EBI
WormBase CE31552 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90657 Hypothetical protein F59F5.3 [Caenorhabditis elegans] ref|NP_509765.2| F59F5.3 [Caenorhabditis elegans] 0.0
blast CAE60798 Hypothetical protein CBG04490 [Caenorhabditis briggsae] 1.0E-106
blast AAD56565 fibroblast growth factor receptor 2 [Oryctolagus cuniculus] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-24
Pfam IPR000719 EMBL-EBI Protein kinase 3.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509765.2 2 5-22,318-340
F59F5.3 2 5-22,318-340
GENEFINDER00000005601 2 5-22,318-340
Sequence
Target Sequence 
>C. ELEGANS:190451_AT
atgaagcaacagttcctgaggaggaaataacaatgtttgatttggtttctattgcttggc
aggttgcgagtgcactggaatacttaaaaggaatggagattacacatcgcgatgttgcta
tgagaaatgttttaattagcaacaacaaagtgtgtaaaatcacagattttgaacgtgcta
agaaaggagaaacaactcgtaaaataagtattgagaagaagatcaaagaaattctaaagg
cacatatgtcaaaagatatacctaaagaatatccaaatgaatgcttgaaaggagtgtatt
attattattcgtctgaggtgtattgttttggaagacttatgttgtgcttgttttcattca
tgaagccttgcgactatggacgaatttatccacctattcaacctgaaaactgtccgaaag
caatgtatgattgtgttttatcgaatcacgtttcaatcaatacatttagatacgacttaa
ttgtggattgcataaatgagaacagaaaaagtcgtccgtcaatttcaagctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGCAACAGTTCCTGAGGAGGA 383 43 1424 Antisense
GCTTGGCAGGTTGCGAGTGCACTGG 307 307 1477 Antisense
GAATGGAGATTACACATCGCGATGT 234 331 1514 Antisense
ATTCGTCTGAGGTGTATTGTTTTGG 531 7 1730 Antisense
TGTTGTGCTTGTTTTCATTCATGAA 469 563 1763 Antisense
GAAGCCTTGCGACTATGGACGAATT 201 345 1785 Antisense
AATTTATCCACCTATTCAACCTGAA 351 175 1806 Antisense
TCAACCTGAAAACTGTCCGAAAGCA 277 629 1821 Antisense
GTTTTATCGAATCACGTTTCAATCA 516 447 1858 Antisense
GATACGACTTAATTGTGGATTGCAT 708 423 1892 Antisense
AAGTCGTCCGTCAATTTCAAGCTGT 698 155 1932 Antisense
Sequence Source Affymetrix Proprietary Database