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[190450_s_at] phospholipase precursor

Description F09C8.1 /REP_DB=WormBase Gene ID /WP=CE09280 /TR=O01300 /GB=CAA92221.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phospholipase precursor
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 42      6grp_highest_nonorm > 32      6grp_total > 31      4grp_total > 61      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1356
1 2 3 4 range
A 1302.3
(3)
P 		776.8
(0.6)
P 		1166.6
(2.4)
P 		6
(-3)
A 		1296
B 1361.7
(3)
P 		907.3
(1)
P 		1051.2
(1.6)
P 		6.7
(-3)
A 		1355
C 1202.3
(3)
P 		1056.2
(2.2)
P 		996
(1.9)
P 		38.2
(-3)
A 		1164
avr 1288.8
(3) 		913.4
(1.2) 		1071.3
(2) 		17
(-3) 		1272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2242
1 2 3 4 5 6 range
A 774.3
(-1.2)
P 		2176.7
(3)
P 		1993
(2.5)
P 		1154.7
(-0)
P 		678.5
(-1.4)
P 		152.2
(-3)
P 		2025
B 1029.1
(-0.6)
P 		1502.7
(0.8)
P 		2295
(3)
P 		982.4
(-0.7)
P 		731.9
(-1.4)
P 		179
(-3)
P 		2116
C 1112.8
(-0.5)
P 		1638.1
(0.9)
P 		2394.3
(3)
P 		1348.7
(0.1)
P 		648.4
(-1.8)
P 		198.7
(-3)
P 		2196
avr 972.1
(-0.7) 		1772.5
(1.7) 		2227.4
(3) 		1161.9
(-0.1) 		686.3
(-1.5) 		176.6
(-3) 		2051
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 474.2
(3)
P 		168.6
(-0.9)
P 		305
(0.9)
P 		0.9
(-3)
A 		473
B 434.2
(3)
P 		224.1
(0.1)
P 		243.6
(0.4)
P 		1.4
(-3)
A 		433
C 398
(3)
P 		303.7
(1.6)
P 		347.1
(2.2)
P 		6.4
(-3)
A 		392
avr 435.5
(3) 		232.1
(0.2) 		298.6
(1.1) 		2.9
(-3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 737
1 2 3 4 5 6 range
A 142.7
(-2.1)
P 		774.2
(3)
P 		434
(0.2)
P 		292.9
(-0.9)
P 		204.7
(-1.6)
P 		37.1
(-3)
P 		737
B 358.1
(0.6)
P 		500.2
(2.3)
P 		557.3
(3)
P 		260.2
(-0.6)
P 		297.4
(-0.2)
P 		66.8
(-3)
P 		491
C 412.5
(0.8)
P 		499.8
(1.8)
P 		609.4
(3)
P 		271.2
(-0.7)
P 		209.8
(-1.4)
P 		66.5
(-3)
P 		543
avr 304.4
(-0.2) 		591.4
(3) 		533.6
(2.4) 		274.8
(-0.6) 		237.3
(-1) 		56.8
(-3) 		535
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190450_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17796
Sequence Type Exemplar sequence
Representative Public ID F09C8.1 NCBI
Target Description F09C8.1 /REP_DB=WormBase Gene ID /WP=CE09280 /TR=O01300 /GB=CAA92221.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phospholipase precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078235 NCBI Caenorhabditis elegans F09C8.1 (F09C8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000039977 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16159074:16163346:-1 11/11 None
SNAP00000039976 ENSEMBL cdna:SNAP chromosome:CEL140:X:16159642:16163412:-1 11/11 None
F09C8.1 ENSEMBL cdna:known chromosome:CEL140:X:16159563:16163426:-1 gene:F09C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16159641-16163412(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase precursor
Ensembl F09C8.1
Entrez Gene 181691 Entrez gene
SwissProt O01300 EMBL-EBI
WormBase CE31470 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430B:1437893_AT cDNA sequence BC033606 mm
MOUSE430_2:1437893_AT cDNA sequence BC033606 mm
MOE430B:1457837_AT cDNA sequence BC033606 mm
MOUSE430_2:1457837_AT cDNA sequence BC033606 mm
MU19KSUBC:TC38683_AT CDNA sequence BC033606, mRNA (cDNA clone MGC:40917 IMAGE:5373588) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92221 Hypothetical protein F09C8.1 [Caenorhabditis elegans] ref|NP_510636.2| F09C8.1 [Caenorhabditis elegans] 0.0
blast CAE69991 Hypothetical protein CBG16394 [Caenorhabditis briggsae] 0.0
blast CAE61529 Hypothetical protein CBG05432 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 1.3E-15
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 1.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510636.2 1 5-27
F09C8.1 1 5-27
GENEFINDER00000039977 3 354-372,379-396,416-435
SNAP00000039976 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:190450_S_AT
agtggaggattccccatacaactgcgcgcaggacatcaaacaagccgtgcaaataattta
cgataatgttccacgtgtcattgtttccctcacaggaatgttgcatctcgagatgctgcg
ccaaactgataccggccactggttctgtcaacgtttgcatcatgacgagtgcggctgcga
gagcaataagaacttcaccgatgctgatatcagacaggcttgctatgattataacaagta
cgaaaaacaaattgagaccgacggaacttttgagaaaaacgacttcacatatgtggttca
accaatgttccaagatactttgattcccccaatggaaaatggaaaaccaactcaaaagtt
cttcgcaccggattgcttccatttctcacaatggggacatgctcttgtgagcacttatct
ttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGAGGATTCCCCATACAACTGC 78 59 585 Antisense
AACTGCGCGCAGGACATCAAACAAG 276 141 604 Antisense
AATGTTCCACGTGTCATTGTTTCCC 687 163 649 Antisense
TCCCTCACAGGAATGTTGCATCTCG 470 597 670 Antisense
CAAACTGATACCGGCCACTGGTTCT 299 191 706 Antisense
CACTGGTTCTGTCAACGTTTGCATC 353 197 721 Antisense
TGACGAGTGCGGCTGCGAGAGCAAT 326 571 747 Antisense
AGAACTTCACCGATGCTGATATCAG 189 73 773 Antisense
GCTGATATCAGACAGGCTTGCTATG 526 295 787 Antisense
AAAAGTTCTTCGCACCGGATTGCTT 605 131 938 Antisense
GCTCTTGTGAGCACTTATCTTTGGA 403 301 985 Antisense
Sequence Source Affymetrix Proprietary Database