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[190447_at]

Description Y14H12B.1 /REP_DB=WormBase Gene ID /WP=CE21365 /TR=Q9TYP7 /GB=AAD12808.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 412.2
(-3)
P 		599.3
(2.7)
P 		608
(3)
P 		479.2
(-0.9)
P 		196
B 446.5
(-2.6)
P 		436.2
(-3)
P 		553.8
(2)
P 		576.3
(3)
P 		140
C 454.5
(-2.3)
P 		440.3
(-3)
P 		563.1
(3)
P 		483.1
(-0.9)
P 		123
avr 437.7
(-3) 		491.9
(-0.6) 		575
(3) 		512.9
(0.3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 804
1 2 3 4 5 6 range
A 489.9
(-2.4)
P 		420.5
(-3)
P 		476.7
(-2.6)
P 		595.3
(-1.6)
P 		826
(0.2)
P 		1171.5
(3)
P 		751
B 570.6
(-2)
P 		468.4
(-3)
P 		655.6
(-1.2)
P 		603.2
(-1.7)
P 		823.3
(0.4)
P 		1089
(3)
P 		621
C 367.7
(-3)
P 		480.8
(-2.1)
P 		524.4
(-1.7)
P 		589.6
(-1.2)
P 		739
(0)
P 		1104.6
(3)
P 		737
avr 476.1
(-2.8) 		456.6
(-3) 		552.2
(-2.1) 		596
(-1.7) 		796.1
(0.1) 		1121.7
(3) 		665
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 150.1
(2.4)
P 		130.1
(1.1)
P 		158.9
(3)
P 		70.2
(-3)
P 		89
B 142.4
(3)
P 		107.7
(-3)
P 		128.3
(0.6)
P 		122.8
(-0.4)
P 		35
C 150.4
(0.6)
P 		126.6
(-0.6)
P 		196.2
(3)
P 		81.5
(-3)
P 		115
avr 147.6
(1.8) 		121.5
(-0.4) 		161.1
(3) 		91.5
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 90.3
(-3)
P 		149.6
(-1.2)
P 		103.8
(-2.6)
P 		151
(-1.1)
P 		249.2
(1.9)
P 		285.2
(3)
P 		195
B 198.5
(-2)
P 		155.9
(-3)
P 		159.2
(-2.9)
P 		159.8
(-2.9)
P 		334.5
(1.3)
P 		406.1
(3)
P 		250
C 136.3
(-2.6)
P 		146.7
(-2.3)
P 		133.5
(-2.6)
P 		118.6
(-3)
P 		239.1
(-0.1)
P 		369.8
(3)
P 		251
avr 141.7
(-2.7) 		150.7
(-2.5) 		132.2
(-3) 		143.1
(-2.7) 		274.3
(0.8) 		353.7
(3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5478
Sequence Type Exemplar sequence
Representative Public ID Y14H12B.1 NCBI
Target Description Y14H12B.1 /REP_DB=WormBase Gene ID /WP=CE21365 /TR=Q9TYP7 /GB=AAD12808.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062297(11), NM_182187(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062297 NCBI Caenorhabditis elegans Y14H12B.1a (Y14H12B.1) mRNA, complete cds. 11/11 None
NM_182187 NCBI Caenorhabditis elegans Y14H12B.1b (Y14H12B.1) mRNA, complete cds. 10/11 None
SNAP00000036987 ENSEMBL cdna:SNAP chromosome:CEL140:II:3934480:3935882:1 10/11 None
GENEFINDER00000036991 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3934480:3936756:1 11/11 None
Y14H12B.1a ENSEMBL cdna:known chromosome:CEL140:II:3934446:3935882:1 gene:Y14H12B.1 11/11 None
Y14H12B.1b ENSEMBL cdna:known chromosome:CEL140:II:3934480:3936001:1 gene:Y14H12B.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3934478-3935881(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y14H12B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12808 Hypothetical protein Y14H12B.1a [Caenorhabditis elegans] ref|NP_494698.1| Y14H12B.1a [Caenorhabditis elegans] 1.0E-107
blast AAD12808 Hypothetical protein Y14H12B.1a [Caenorhabditis elegans] ref|NP_494698.1| Y14H12B.1a [Caenorhabditis elegans] 1.0E-106
blast AAD12808 Hypothetical protein Y14H12B.1a [Caenorhabditis elegans] ref|NP_494698.1| Y14H12B.1a [Caenorhabditis elegans] 3.0E-99
blast AAN60502 Hypothetical protein Y14H12B.1b [Caenorhabditis elegans] ref|NP_871987.1| Y14H12B.1b [Caenorhabditis elegans] 3.0E-84
blast AAN60502 Hypothetical protein Y14H12B.1b [Caenorhabditis elegans] ref|NP_871987.1| Y14H12B.1b [Caenorhabditis elegans] 5.0E-80
blast AAD12808 Hypothetical protein Y14H12B.1a [Caenorhabditis elegans] ref|NP_494698.1| Y14H12B.1a [Caenorhabditis elegans] 4.0E-79
blast AAN60502 Hypothetical protein Y14H12B.1b [Caenorhabditis elegans] ref|NP_871987.1| Y14H12B.1b [Caenorhabditis elegans] 5.0E-79
Sequence
Target Sequence 
>C. ELEGANS:190447_AT
tcagtggcacactagcgtagcacacaaactagataattctgagattccatcgacgcggct
tcaactctccgacgacgaagctccgccatcatctccatcgctgaatttgagcacaagatc
catgcgaaagagatcggtccccattccgcttccagaagactcgaaagaaatggtggcttc
gagaaaatcaacgcagaagaaggcaaaaaaggagaagaccccagagaaagaagcaactcc
ggaaccggaatctcctgacgattcgggatccgaagaaatcgataatgagatgatggaaga
ggagaagcaggagtacaagttcgtgtataacattgtcgagcgcgtgccgcctccacaaac
tgtattctctgtcggcgaaatgggcaagaagctgctgccggagctccaggcgaaggtctc
tctcaccaagagaaagcacaaagaagactactgcatcgcgtgcctcgactacaaattcgt
caccggagagtgctccaaggctcacgatgacaacgcggatcgcttgcagaagttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTGGCACACTAGCGTAGCACAC 6 623 144 Antisense
ATGCGAAAGAGATCGGTCCCCATTC 603 41 265 Antisense
ACTCCGGAACCGGAATCTCCTGACG 679 97 379 Antisense
ATCTCCTGACGATTCGGGATCCGAA 117 33 393 Antisense
GTATAACATTGTCGAGCGCGTGCCG 188 453 468 Antisense
GCCTCCACAAACTGTATTCTCTGTC 269 283 492 Antisense
AAGAAGACTACTGCATCGCGTGCCT 53 153 584 Antisense
GCGTGCCTCGACTACAAATTCGTCA 399 291 601 Antisense
AAATTCGTCACCGGAGAGTGCTCCA 652 115 616 Antisense
CCAAGGCTCACGATGACAACGCGGA 300 275 638 Antisense
AACGCGGATCGCTTGCAGAAGTTCT 386 145 655 Antisense
Sequence Source Affymetrix Proprietary Database