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[190444_s_at]

Description T05G5.9 /REP_DB=WormBase Gene ID /WP=CE21153 /TR=SW:P34562 /GB=CAA81596.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      6grp_highest_nonorm > 81      6grp_total > 75      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 203.1
(3)
P 		28.1
(-3)
A 		118.7
(0.1)
A 		99.6
(-0.5)
P 		175
B 209.3
(3)
P 		116.5
(-3)
A 		184.4
(1.4)
P 		137
(-1.7)
P 		93
C 249.4
(3)
P 		106.8
(-2)
A 		154.7
(-0.3)
P 		78.3
(-3)
P 		171
avr 220.6
(3) 		83.8
(-3) 		152.6
(0) 		105
(-2.1) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 138.7
(-3)
P 		231.3
(-0.7)
P 		232
(-0.7)
P 		342.6
(2.1)
P 		211.4
(-1.2)
P 		377.3
(3)
P 		239
B 149.9
(-3)
P 		231.2
(-0.9)
P 		270.3
(0.1)
P 		317.6
(1.3)
P 		232.4
(-0.9)
P 		384.1
(3)
P 		234
C 196.7
(-0.7)
P 		179.3
(-1.1)
P 		276.4
(1.1)
P 		303
(1.8)
P 		98
(-3)
P 		356.3
(3)
P 		258
avr 161.8
(-3) 		213.9
(-1.5) 		259.6
(-0.2) 		321.1
(1.5) 		180.6
(-2.5) 		372.6
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 73.9
(3)
P 		6.1
(-3)
A 		31
(-0.8)
A 		14.6
(-2.2)
P 		68
B 66.8
(3)
P 		28.8
(-3)
A 		42.7
(-0.8)
P 		29.2
(-2.9)
P 		38
C 82.6
(3)
P 		30.7
(-1.5)
A 		53.9
(0.5)
P 		13.2
(-3)
P 		69
avr 74.4
(3) 		21.9
(-2.7) 		42.5
(-0.5) 		19
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 25.6
(-3)
P 		82.3
(2.1)
P 		50.5
(-0.7)
P 		86.9
(2.5)
P 		63.8
(0.5)
P 		91.9
(3)
P 		66
B 52.1
(-3)
P 		77
(-1.4)
P 		65.6
(-2.1)
P 		84.1
(-0.9)
P 		94.4
(-0.2)
P 		143.2
(3)
P 		91
C 72.9
(-0.2)
P 		54.7
(-1.4)
P 		70.3
(-0.4)
P 		60.9
(-1)
P 		31.7
(-3)
P 		119.3
(3)
P 		88
avr 50.2
(-3) 		71.3
(-1.1) 		62.1
(-1.9) 		77.3
(-0.6) 		63.3
(-1.8) 		118.1
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190444_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6171
Sequence Type Exemplar sequence
Representative Public ID T05G5.9 NCBI
Target Description T05G5.9 /REP_DB=WormBase Gene ID /WP=CE21153 /TR=SW:P34562 /GB=CAA81596.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027577(11), NM_001027578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027577 NCBI Caenorhabditis elegans T05G5.9a (T05G5.9) mRNA, complete cds. 11/11 None
NM_001027578 NCBI Caenorhabditis elegans T05G5.9b (T05G5.9) mRNA, complete cds. 11/11 None
SNAP00000019882 ENSEMBL cdna:SNAP chromosome:CEL140:III:9757670:9762037:-1 10/11 None
T05G5.9a ENSEMBL cdna:known chromosome:CEL140:III:9757528:9762037:-1 gene:T05G5.9 11/11 None
T05G5.9b ENSEMBL cdna:known chromosome:CEL140:III:9757689:9762038:-1 gene:T05G5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019894 5/11 Cross Hyb Matching Probes None
GENEFINDER00000019884 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9757684-9763345(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05G5.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81596 Hypothetical protein T05G5.9a [Caenorhabditis elegans] ref|NP_001022748.1| T05G5.9a [Caenorhabditis elegans] sp|P34562|YNP9_CAEEL Hypothetical GRIP and coiled-coil domain-containing protein T05G5.9 in chromosome III 0.0
blast CAD90180 Hypothetical protein T05G5.9b [Caenorhabditis elegans] ref|NP_001022749.1| T05G5.9b [Caenorhabditis elegans] 0.0
blast CAE65111 Hypothetical protein CBG09976 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000237 EMBL-EBI GRIP domain 1.9E-24
Pfam IPR000237 EMBL-EBI GRIP domain 1.9E-24
Pfam IPR000237 EMBL-EBI GRIP domain 1.9E-24
Sequence
Target Sequence 
>C. ELEGANS:190444_S_AT
gctattgcagctgtcgtacctcagccgattcagcttccagaacatcctattccacctctt
cattatcaaagaccagcagttgctccttctgattctgtttcttgttatgatgagccaaca
cagcctgatcggtcactggaggatgttttgtatggagatctcggtgatgaatacagagtc
gaatcagatgaactatcggaggagaaattcaaggtcattctagaccagttagagaatttg
aagaaaacaaatcatcacgtcgcagagcttctcagtgatgccgagactgcaaatggaagg
ttaacaactcagaattcactgctaaaagatgaaattcgccgactggaacgagaagaaaag
cgagaagccgagttgtcaaacgagaaaaatatggaatatttgaagaacgtatttgtacag
tttctcaagccagaaagtgttcccgcagaacgagaccagctggttatcgtactgcagaga
gttctacatttgtcaccgaaagaagtcgaaattctgaaagctgcatcagcacatatggca
accgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTGCAGCTGTCGTACCTCAGC 706 303 1531 Antisense
TTCAGCTTCCAGAACATCCTATTCC 334 687 1559 Antisense
CTATTCCACCTCTTCATTATCAAAG 45 225 1577 Antisense
CAAAGACCAGCAGTTGCTCCTTCTG 349 193 1597 Antisense
CTCCTTCTGATTCTGTTTCTTGTTA 489 235 1613 Antisense
CCAACACAGCCTGATCGGTCACTGG 429 275 1645 Antisense
AAATCATCACGTCGCAGAGCTTCTC 602 117 1779 Antisense
AGTGTTCCCGCAGAACGAGACCAGC 329 57 1966 Antisense
GAGACCAGCTGGTTATCGTACTGCA 21 395 1982 Antisense
GAGAGTTCTACATTTGTCACCGAAA 466 395 2007 Antisense
GCATCAGCACATATGGCAACCGCTC 533 309 2053 Antisense
Sequence Source Affymetrix Proprietary Database