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[190441_at] zinc finger protein

Description Y47G6A.14 /REP_DB=WormBase Gene ID /WP=CE24358 /TR=Q9N3T6 /GB=AAF60661.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 88      6grp_total > 87      4grp_total > 01      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 101.3
(-2.1)
A 		80.4
(-3)
A 		118.1
(-1.5)
A 		227.3
(3)
P 		147
B 75.4
(-3)
A 		109.4
(-2.3)
A 		104.8
(-2.4)
A 		374.8
(3)
P 		299
C 94
(-3)
A 		96.4
(-2.9)
A 		157.8
(-1.3)
P 		317.3
(3)
P 		223
avr 90.2
(-3) 		95.4
(-2.9) 		126.9
(-2) 		306.5
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 96.7
(-3)
A 		116.2
(-2.5)
A 		150.5
(-1.7)
P 		148.1
(-1.8)
P 		348.4
(3)
P 		338.7
(2.8)
P 		252
B 172.5
(-2)
P 		140
(-2.5)
P 		104.6
(-3)
A 		217
(-1.3)
P 		313.1
(0.1)
P 		511.4
(3)
P 		407
C 134.1
(-2.3)
P 		88.2
(-3)
P 		173.2
(-1.7)
P 		207.4
(-1.2)
P 		204.6
(-1.2)
P 		482.3
(3)
P 		394
avr 134.4
(-2.6) 		114.8
(-3) 		142.8
(-2.5) 		190.8
(-1.6) 		288.7
(0.2) 		444.1
(3) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 36.9
(3)
A 		17.5
(-3)
A 		30.9
(1.1)
A 		33.3
(1.9)
P 		19
B 24.1
(-3)
A 		27
(-2.7)
A 		24.3
(-3)
A 		79.9
(3)
P 		56
C 31.1
(-2.3)
A 		27.7
(-3)
A 		55
(3)
P 		53.5
(2.7)
P 		27
avr 30.7
(-1.7) 		24.1
(-3) 		36.7
(-0.6) 		55.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 17.8
(-3)
A 		41.3
(-1.4)
A 		32.8
(-2)
P 		37.6
(-1.6)
P 		105.1
(3)
P 		82.5
(1.4)
P 		87
B 60
(-1.7)
P 		46.6
(-2.2)
P 		25.4
(-3)
A 		57.5
(-1.8)
P 		127.2
(0.7)
P 		190.7
(3)
P 		165
C 49.7
(-2)
P 		26.9
(-3)
P 		44.1
(-2.2)
P 		41.7
(-2.3)
P 		66.2
(-1.2)
P 		161.4
(3)
P 		135
avr 42.5
(-2.5) 		38.3
(-2.8) 		34.1
(-3) 		45.6
(-2.4) 		99.5
(0.5) 		144.9
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.278
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.14 NCBI
Target Description Y47G6A.14 /REP_DB=WormBase Gene ID /WP=CE24358 /TR=Q9N3T6 /GB=AAF60661.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058763(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058763 NCBI Caenorhabditis elegans Y47G6A.14 (Y47G6A.14) mRNA, complete cds. 9/11 None
SNAP00000033973 ENSEMBL cdna:SNAP chromosome:CEL140:I:3462376:3468391:-1 9/11 None
GENEFINDER00000034096 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3462376:3466289:-1 10/11 None
Y47G6A.14 ENSEMBL cdna:known chromosome:CEL140:I:3462376:3466289:-1 gene:Y47G6A.14 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3462375-3466289(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl Y47G6A.14
Entrez Gene 189994 Entrez gene
SwissProt Q9N3T6 EMBL-EBI
WormBase CE34401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491164 Y47G6A.14 [Caenorhabditis elegans] gb|AAF60661.2| Hypothetical protein Y47G6A.14 [Caenorhabditis elegans] 0.0
blast CAE66655 Hypothetical protein CBG11992 [Caenorhabditis briggsae] 3.0E-13
blast CAE66655 Hypothetical protein CBG11992 [Caenorhabditis briggsae] 5.0E-11
blast CAE66655 Hypothetical protein CBG11992 [Caenorhabditis briggsae] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.9E-14
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.0E-7
Sequence
Target Sequence 
>C. ELEGANS:190441_AT
tttccatacagattccgctgctgcaaaacatgcattgaagtcgtcggaaaactcgttgac
aatcttctcgaaacaactgaaatcgacgcagttgaccttgaaactctgccgatttgcacg
aattgtatcgtcgatcatcatcattctgacggcgagcacaagactgtcagatattctcaa
gttcaggaagcctacacctcgctcaaggttttctcgaaagttgaaaagcataaagatgag
attaatatcaaattttcggctcttcttgacaccttcaaacattatatcacacagttggaa
ggatatgatgacaaaatcaccaagatgtcgaaaatcgcaatggaaagtcgtggacatccg
gaacaagcggaggttgtcaagggatttcagaacgagttggagaaggttcggaaacaagcc
tgccggggttttcgattttttgaaaaaccgaaaagtgaaaaattttgcggtcaaatttgc
tcaaaaaagtgcaatttctgtttttttgcggaccacgcaatttcttctctccaatcgaat
gctgatatgagccagactgtcgtcagaatgcagcagaaacgcctcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATACAGATTCCGCTGCTGCA 265 667 1174 Antisense
GACGCAGTTGACCTTGAAACTCTGC 642 377 1258 Antisense
GAAACTCTGCCGATTTGCACGAATT 570 357 1273 Antisense
GTCGATCATCATCATTCTGACGGCG 377 473 1303 Antisense
CAAGTTCAGGAAGCCTACACCTCGC 51 185 1351 Antisense
TACACCTCGCTCAAGGTTTTCTCGA 188 643 1366 Antisense
GCTCTTCTTGACACCTTCAAACATT 684 299 1432 Antisense
TTTCTGTTTTTTTGCGGACCACGCA 253 671 1668 Antisense
ATTTCTTCTCTCCAATCGAATGCTG 103 17 1693 Antisense
GAGCCAGACTGTCGTCAGAATGCAG 205 385 1722 Antisense
AGAATGCAGCAGAAACGCCTCGACG 462 75 1738 Antisense
Sequence Source Affymetrix Proprietary Database