[Home] | [Total List]

[190440_at] 7TM chemoreceptor, sra family

Description T19D12.8 /REP_DB=WormBase Gene ID /WP=CE18261 /TR=Q22576 /GB=AAC24432.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor protein
Cluster 6grp_total > 93      4grp_total > 04      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 54.6
(-2.8)
A 		51.9
(-2.9)
A 		50.3
(-3)
A 		175.8
(3)
A 		126
B 81.2
(-0.5)
A 		68.9
(-3)
A 		87.1
(0.7)
A 		98.7
(3)
A 		30
C 99.5
(-0.2)
A 		59.3
(-1.7)
A 		22
(-3)
A 		188.8
(3)
P 		167
avr 78.4
(-1.5) 		60
(-2.6) 		53.1
(-3) 		154.4
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 78.1
(1.4)
A 		32.4
(-3)
A 		95.2
(3)
P 		32.2
(-3)
A 		83.3
(1.9)
P 		61.6
(-0.2)
A 		63
B 62.1
(-1.9)
A 		66.8
(-1.4)
P 		60.9
(-2)
A 		50.1
(-3)
A 		113.5
(3)
P 		57.5
(-2.3)
A 		63
C 25.1
(-3)
A 		82.1
(3)
P 		39.6
(-1.5)
A 		31.8
(-2.3)
A 		62
(0.9)
A 		43.2
(-1.1)
M 		57
avr 55.1
(-0.9) 		60.4
(-0.2) 		65.2
(0.4) 		38
(-3) 		86.3
(3) 		54.1
(-1) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19.9
(0.6)
A 		11.3
(-3)
A 		13.1
(-2.3)
A 		25.7
(3)
A 		14
B 25.9
(3)
A 		17
(-3)
A 		20.2
(-0.8)
A 		21
(-0.3)
A 		9
C 32.9
(3)
A 		17
(-0.8)
A 		7.7
(-3)
A 		31.8
(2.7)
P 		25
avr 26.2
(3) 		15.1
(-2.3) 		13.7
(-3) 		26.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.4
(-0.8)
A 		11.5
(-1.8)
A 		20.7
(1.4)
P 		8.2
(-3)
A 		25.1
(3)
P 		15
(-0.6)
A 		17
B 21.6
(-1.5)
A 		22.2
(-1.4)
P 		14.8
(-2.7)
A 		13.3
(-3)
A 		46.1
(3)
P 		21.4
(-1.5)
A 		33
C 9.3
(-2.1)
A 		25
(3)
P 		10.1
(-1.8)
A 		6.4
(-3)
A 		20.1
(1.4)
A 		14.5
(-0.4)
M 		19
avr 15.1
(-1.4) 		19.6
(-0.1) 		15.2
(-1.3) 		9.3
(-3) 		30.4
(3) 		17
(-0.8) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4037
Sequence Type Exemplar sequence
Representative Public ID T19D12.8 NCBI
Target Description T19D12.8 /REP_DB=WormBase Gene ID /WP=CE18261 /TR=Q22576 /GB=AAC24432.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062951 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-26) (sra-26) mRNA, complete cds. 11/11 None
GENEFINDER00000003092 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6649732:6654292:-1 11/11 None
T19D12.8 ENSEMBL cdna:known chromosome:CEL140:II:6649732:6651762:-1 gene:T19D12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6649728-6651759(-) 96.56 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-26
Ensembl T19D12.8
Entrez Gene 188610 Entrez gene
SwissProt Q22576 EMBL-EBI
WormBase CE18261 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24431 Hypothetical protein T19D12.9 [Caenorhabditis elegans] ref|NP_495353.1| T19D12.9 [Caenorhabditis elegans] 0.0
blast CAE56160 Hypothetical protein CBG23780 [Caenorhabditis briggsae] 0.0
blast AAC24432 Serpentine receptor, class a (alpha) protein 26 [Caenorhabditis elegans] ref|NP_495352.1| Serpentine Receptor, class A (alpha) family member (sra-26) [Caenorhabditis elegans] 1.0E-175
blast CAB07600 Hypothetical protein F28C12.4 [Caenorhabditis elegans] ref|NP_493216.1| Serpentine Receptor, class A (alpha) family member (sra-20) [Caenorhabditis elegans] sp|O17844|SRA20_CAEEL Serpentine receptor class alpha-20 (Protein sra-20) 3.0E-95
blast CAB07598 Hypothetical protein F28C12.1 [Caenorhabditis elegans] ref|NP_493212.2| Serpentine Receptor, class A (alpha) family member (sra-17) [Caenorhabditis elegans] sp|O17842|SRA17_CAEEL Serpentine receptor class alpha-17 (Protein sra-17) 2.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495352.1 5 26-48,149-171,200-218,246-268,281-303
T19D12.8 5 26-48,149-171,200-218,246-268,281-303
GENEFINDER00000003092 18 20-42,71-93,100-122,127-149,161-183,193-212,253-275,290-312,325-344,349-370,383-405,415-437,497-516,580-597,617-639,668-686,714-736,749-771
Sequence
Target Sequence 
>C. ELEGANS:190440_AT
cagactcattgcttgttatttcccaaagctatatataaaaaccgaaaacttgataactat
aactctgcttattatacagttttctcttactgttggaactcatttctacgcctatctggg
agttccattggctggatatgttccgatgtgttcatacccaccacagttggcaatacgttt
tgatacagttaataaagttcggactttagtcatgagttgctgtattgtggtaactcttac
tattttatattttaacattaaagcagaaaaaagaatccatcataacaattttgacccaaa
tcaacgatactttgcatacgaaaaaatgacaacatcgaaatcggtttgcacattgattat
tattcaatttttatgtgttttgatatcatcttttggtgttactatactccgaaacagcaa
aaatcagctttcagaagaagtttatcatacaattgttccatttttgccgggagtgaccta
tgcaaacctgtgtcttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACTCATTGCTTGTTATTTCCCA 621 205 408 Antisense
CTGTTGGAACTCATTTCTACGCCTA 247 239 497 Antisense
TTCTACGCCTATCTGGGAGTTCCAT 485 683 511 Antisense
TCCATTGGCTGGATATGTTCCGATG 592 591 531 Antisense
TGTTCCGATGTGTTCATACCCACCA 502 561 546 Antisense
ATACCCACCACAGTTGGCAATACGT 661 21 561 Antisense
GTTGCTGTATTGTGGTAACTCTTAC 7 439 623 Antisense
ACATCGAAATCGGTTTGCACATTGA 77 107 739 Antisense
TCTTTTGGTGTTACTATACTCCGAA 282 615 796 Antisense
GTTCCATTTTTGCCGGGAGTGACCT 274 441 862 Antisense
ACCTATGCAAACCTGTGTCTTCCAA 438 87 883 Antisense
Sequence Source Affymetrix Proprietary Database