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[190438_at] Zinc finger, C2H2 type

Description R07E5.5 /REP_DB=WormBase Gene ID /WP=CE00654 /TR=Q21825 /GB=CAA83620.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 17      4grp_total > 09      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.1
(-3)
A 		4.6
(-2.7)
A 		20.3
(-1.1)
A 		59.2
(3)
A 		57
B 5.6
(-3)
A 		10.4
(-1.6)
A 		9.8
(-1.7)
A 		25.5
(3)
A 		20
C 20.9
(-2.5)
A 		25.4
(-1.2)
A 		19
(-3)
A 		40.4
(3)
A 		21
avr 9.5
(-3) 		13.5
(-2.3) 		16.4
(-1.7) 		41.7
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 84.2
(3)
A 		32.1
(-0.9)
A 		11.1
(-2.5)
A 		4.1
(-3)
A 		27.8
(-1.2)
A 		20.2
(-1.8)
A 		80
B 94.4
(3)
A 		63.7
(0.9)
A 		11.9
(-2.6)
A 		31.6
(-1.2)
A 		5.3
(-3)
A 		19.6
(-2)
A 		89
C 61.8
(3)
A 		18.3
(-1.3)
A 		9.2
(-2.2)
A 		9.9
(-2.1)
A 		3.7
(-2.8)
A 		1.3
(-3)
A 		61
avr 80.1
(3) 		38
(-0.6) 		10.7
(-3) 		15.2
(-2.6) 		12.3
(-2.9) 		13.7
(-2.7) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		1
(-2.8)
A 		5.3
(0.5)
A 		8.7
(3)
A 		8
B 1.8
(-3)
A 		2.6
(-1.7)
A 		2.3
(-2.2)
A 		5.4
(3)
A 		4
C 6.9
(-0.4)
A 		7.3
(3)
A 		6.6
(-3)
A 		6.8
(-1.3)
A 		1
avr 3.1
(-3) 		3.6
(-2.2) 		4.7
(-0.5) 		7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.5
(3)
A 		11.4
(1.3)
A 		2.4
(-2.4)
A 		1
(-3)
A 		8.4
(0.1)
A 		4.9
(-1.4)
A 		15
B 32.8
(3)
A 		21.2
(0.7)
A 		2.9
(-2.9)
A 		8.4
(-1.8)
A 		2.2
(-3)
A 		7.3
(-2)
A 		31
C 22.9
(3)
A 		5.6
(-1.6)
A 		2.3
(-2.5)
A 		2
(-2.6)
A 		1.2
(-2.8)
A 		0.4
(-3)
A 		23
avr 23.7
(3) 		12.7
(-0.1) 		2.5
(-3) 		3.8
(-2.6) 		3.9
(-2.6) 		4.2
(-2.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6474
Sequence Type Exemplar sequence
Representative Public ID R07E5.5 NCBI
Target Description R07E5.5 /REP_DB=WormBase Gene ID /WP=CE00654 /TR=Q21825 /GB=CAA83620.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065486 NCBI Caenorhabditis elegans R07E5.5 (R07E5.5) mRNA, complete cds. 11/11 None
R07E5.5 ENSEMBL cdna:known chromosome:CEL140:III:4397593:4398454:1 gene:R07E5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012846 7/11 Cross Hyb Matching Probes None
GENEFINDER00000012864 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4397592-4398454(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl R07E5.5
Entrez Gene 187681 Entrez gene
SwissProt Q21825 EMBL-EBI
WormBase CE00654 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83620 Hypothetical protein R07E5.5 [Caenorhabditis elegans] ref|NP_497887.1| R07E5.5 [Caenorhabditis elegans] 1.0E-53
blast CAB03791 Hypothetical protein B0250.4 [Caenorhabditis elegans] ref|NP_507936.1| B0250.4 [Caenorhabditis elegans] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:190438_AT
ggaataggttacataccgctgttgaacgtgtcgcataagcatgggggaacacatttttac
agaaaaaattctggaacttgtgatctatgtgagaagaacttcaaaacatcggaagaattg
gtggaacataagaaaaattatccaagagcggatgttgaaaaagcattgtctgtttataag
gaaaaggacactatttacaagtgtctacaatgttccggagagttccgtcttaaggaagat
tttgattaccatcaagaattgcataaaagacttggagaattaaaaagcgcttccagtaac
aaaagtgaagccaacaaggacgacgaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATAGGTTACATACCGCTGTTGA 685 531 22 Antisense
ATACCGCTGTTGAACGTGTCGCATA 154 23 34 Antisense
GAACGTGTCGCATAAGCATGGGGGA 43 347 45 Antisense
GCATGGGGGAACACATTTTTACAGA 191 309 60 Antisense
AATTCTGGAACTTGTGATCTATGTG 563 177 88 Antisense
GAAAAAGCATTGTCTGTTTATAAGG 214 355 178 Antisense
TACAAGTGTCTACAATGTTCCGGAG 410 639 217 Antisense
TGTTCCGGAGAGTTCCGTCTTAAGG 448 561 232 Antisense
GGAGAATTAAAAAGCGCTTCCAGTA 686 519 295 Antisense
AAGCGCTTCCAGTAACAAAAGTGAA 38 149 306 Antisense
GAAGCCAACAAGGACGACGAAAGTG 395 341 328 Antisense
Sequence Source Affymetrix Proprietary Database