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[190437_at]

Description K09G1.4 /REP_DB=WormBase Gene ID /WP=CE21067 /TR=P90927 /GB=CAB03199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dopamine receptor like
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 34      6grp_highest_nonorm > 80      6grp_total > 03      4grp_total > 13      6grp_cgc > 40      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 211.9
(0.9)
P 		75.5
(-2.5)
A 		56.5
(-3)
A 		294.4
(3)
P 		238
B 195.1
(-0.3)
P 		91
(-3)
A 		90.7
(-3)
A 		323.9
(3)
P 		233
C 284.3
(1.9)
P 		126.7
(-1.8)
A 		77.1
(-3)
A 		328.5
(3)
P 		251
avr 230.4
(0.9) 		97.7
(-2.4) 		74.8
(-3) 		315.6
(3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 184.5
(-2.4)
P 		181
(-3)
P 		186.4
(-2.1)
P 		215.5
(3)
P 		183
(-2.7)
P 		183.9
(-2.5)
P 		35
B 233.7
(2.3)
P 		240.6
(3)
P 		181.9
(-3)
P 		195.5
(-1.6)
P 		186
(-2.6)
P 		219.5
(0.8)
P 		59
C 199.4
(-0.4)
P 		225.8
(1.4)
P 		164.7
(-2.8)
P 		248.3
(3)
P 		161.5
(-3)
P 		161.3
(-3)
P 		87
avr 205.9
(1.1) 		215.8
(2.4) 		177.7
(-2.9) 		219.8
(3) 		176.8
(-3) 		188.2
(-1.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 77.2
(3)
P 		16.4
(-2.8)
A 		14.8
(-3)
A 		43.1
(-0.3)
P 		62
B 62.2
(2.2)
P 		22.5
(-2.8)
A 		21
(-3)
A 		69
(3)
P 		48
C 94.1
(3)
P 		36.4
(-2.2)
A 		26.9
(-3)
A 		55.4
(-0.5)
P 		67
avr 77.8
(3) 		25.1
(-2.6) 		20.9
(-3) 		55.8
(0.7) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 34
(-3)
P 		64.4
(3)
P 		40.6
(-1.7)
P 		54.7
(1.1)
P 		55.2
(1.2)
P 		44.8
(-0.9)
P 		30
B 81.3
(2.9)
P 		80.1
(2.7)
P 		44.2
(-3)
P 		51.8
(-1.8)
P 		75.6
(2)
P 		81.9
(3)
P 		38
C 73.9
(3)
P 		68.9
(2.1)
P 		41.9
(-3)
P 		49.9
(-1.5)
P 		52.2
(-1.1)
P 		54
(-0.7)
P 		32
avr 63.1
(1.3) 		71.1
(3) 		42.2
(-3) 		52.1
(-0.9) 		61
(0.9) 		60.2
(0.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12056
Sequence Type Exemplar sequence
Representative Public ID K09G1.4 NCBI
Target Description K09G1.4 /REP_DB=WormBase Gene ID /WP=CE21067 /TR=P90927 /GB=CAB03199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dopamine receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028877(9), NM_001028876(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028877 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-2) (dop-2) mRNA, complete cds. 9/11 None
NM_001028876 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-2) (dop-2) mRNA, complete cds. 9/11 None
SNAP00000020034 ENSEMBL cdna:SNAP chromosome:CEL140:V:9613882:9617381:1 9/11 None
GENEFINDER00000020039 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9611164:9617381:1 9/11 None
K09G1.4b ENSEMBL cdna:known chromosome:CEL140:V:9611146:9617508:1 gene:K09G1.4 9/11 None
K09G1.4a ENSEMBL cdna:known chromosome:CEL140:V:9611146:9617418:1 gene:K09G1.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9610767-9617381(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE53732 Hypothetical protein K09G1.4b [Caenorhabditis elegans] ref|NP_001024048.1| DOPamine receptor family member (dop-2) [Caenorhabditis elegans] dbj|BAD01495.1| D2-like dopamine receptor long variant [Caenorhabditis elegans] 0.0
blast CAB03199 Hypothetical protein K09G1.4a [Caenorhabditis elegans] ref|NP_001024047.1| DOPamine receptor family member (dop-2) [Caenorhabditis elegans] dbj|BAD01496.1| D2-like dopamine receptor short variant [Caenorhabditis elegans] 0.0
blast CAE72207 Hypothetical protein CBG19317 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.1E-64
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-28
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.1E-99
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-28
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024048.1 7 41-63,76-98,113-135,156-178,202-224,752-774,789-811
NP_001024047.1 7 41-63,76-98,113-135,156-178,202-224,617-639,654-676
K09G1.4b 7 41-63,76-98,113-135,156-178,202-224,752-774,789-811
K09G1.4a 7 41-63,76-98,113-135,156-178,202-224,617-639,654-676
SNAP00000020034 3 15-34,516-538,553-575
GENEFINDER00000020039 7 41-63,76-98,113-135,156-178,202-224,761-783,798-820
Sequence
Target Sequence 
>C. ELEGANS:190437_AT
tcctcccttggccattcaaatattaacaagacccagtttaccacgtaagtttttgaaatt
cttttttacatcaaaatatgtttttttattacatcaaaaaatgttttttgaaacacttcc
gtactttgcagatcttgacctccaacgaatggattcaattggcactacatgctcatcaaa
aacacgtgccgatagcttaaggtccgtcgactcgaaaggctcaaagaaaagcaatcgaaa
tgggattgctgtcaagttggtcaagagggctatcaagcatgagcatagtttgaagaggaa
ggtctcaaaagcacaacgtaaagagaaacgagccacaaagacattgggtgttgttgttgg
agtatttcttgtgtgctgggttccattctttgttattaatattttgaatgcagtttgcat
tttgctcaataaagattcgtgtcaggttggctatgatctcttcttctattgtacgtggat
tggttacatgaattcattcatgaatcccattatctatacaatcttcaacacggaattccg
tcgtgctttcaaatcaattatattcggccgaaattcaacacgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCCTTGGCCATTCAAATATTA 121 589 1998 Antisense
CACTTCCGTACTTTGCAGATCTTGA 301 195 2111 Antisense
CAGATCTTGACCTCCAACGAATGGA 482 205 2126 Antisense
ACACGTGCCGATAGCTTAAGGTCCG 400 105 2179 Antisense
AAGGTCCGTCGACTCGAAAGGCTCA 62 159 2196 Antisense
TATTTCTTGTGTGCTGGGTTCCATT 619 661 2360 Antisense
GCTGGGTTCCATTCTTTGTTATTAA 607 293 2372 Antisense
GTCAGGTTGGCTATGATCTCTTCTT 188 467 2438 Antisense
GATCTCTTCTTCTATTGTACGTGGA 297 419 2452 Antisense
ACACGGAATTCCGTCGTGCTTTCAA 573 107 2525 Antisense
ATTCGGCCGAAATTCAACACGCCAC 313 9 2559 Antisense
Sequence Source Affymetrix Proprietary Database