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[190436_at] paramyosin

Description F07A5.7 /REP_DB=WormBase Gene ID /WP=CE09197 /GEN=unc-15 /TR=Q93214 /GB=CAA96622.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=paramyosin
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 16      6grp_total > 32      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8239
1 2 3 4 range
A 7424.5
(1.2)
P 		9805.3
(3)
P 		7598.2
(1.3)
P 		1841.1
(-3)
P 		7964
B 6209.8
(1.2)
P 		8103.5
(3)
P 		7605.9
(2.5)
P 		1658.3
(-3)
P 		6445
C 6382.1
(1.2)
P 		8372.4
(3)
P 		7225.9
(2)
P 		1566.2
(-3)
P 		6806
avr 6672.1
(1.2) 		8760.4
(3) 		7476.7
(1.9) 		1688.5
(-3) 		7072

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7469
1 2 3 4 5 6 range
A 9055.2
(2.4)
P 		9470.1
(3)
P 		7584.9
(0.1)
P 		7957.7
(0.7)
P 		7955.6
(0.7)
P 		5536.2
(-3)
P 		3934
B 8508.2
(2.2)
P 		8132.2
(1.8)
P 		9240.8
(3)
P 		8238.3
(1.9)
P 		6399.1
(-0)
P 		3648.7
(-3)
P 		5592
C 9191.1
(1.9)
P 		7785.1
(0.8)
P 		10537.2
(3)
P 		7299.2
(0.4)
P 		8761.8
(1.6)
P 		3068.5
(-3)
P 		7469
avr 8918.2
(2.8) 		8462.5
(2.2) 		9121
(3) 		7831.7
(1.5) 		7705.5
(1.3) 		4084.5
(-3) 		5037
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2439
1 2 3 4 range
A 2703.3
(3)
P 		2128.5
(1.6)
P 		1986.3
(1.2)
P 		269.5
(-3)
P 		2434
B 1980.2
(2.9)
P 		2001.4
(3)
P 		1762.5
(2.1)
P 		353.4
(-3)
P 		1648
C 2112.6
(1.9)
P 		2407.1
(2.7)
P 		2518.5
(3)
P 		264.1
(-3)
P 		2254
avr 2265.4
(3) 		2179
(2.7) 		2089.1
(2.5) 		295.7
(-3) 		1970

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2380
1 2 3 4 5 6 range
A 1669.3
(-2)
P 		3368
(3)
P 		1651.8
(-2.1)
P 		2018.3
(-1)
P 		2400.7
(0.1)
P 		1347.9
(-3)
P 		2020
B 2960.4
(3)
P 		2706.9
(2)
P 		2243.9
(0.3)
P 		2182
(0.1)
P 		2599.9
(1.6)
P 		1360.6
(-3)
P 		1600
C 3406.8
(3)
P 		2375.5
(0.4)
P 		2681.9
(1.2)
P 		1467.9
(-1.9)
P 		2835.2
(1.6)
P 		1027.2
(-3)
P 		2380
avr 2678.8
(2.5) 		2816.8
(3) 		2192.5
(0.6) 		1889.4
(-0.5) 		2611.9
(2.2) 		1245.2
(-3) 		1572
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.468
Sequence Type Exemplar sequence
Representative Public ID F07A5.7 NCBI
Target Description F07A5.7 /REP_DB=WormBase Gene ID /WP=CE09197 /GEN=unc-15 /TR=Q93214 /GB=CAA96622.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=paramyosin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059684 NCBI Caenorhabditis elegans F07A5.7 (paramyosin) mRNA, complete cds. 11/11 None
SNAP00000034789 ENSEMBL cdna:SNAP chromosome:CEL140:I:7385716:7388727:-1 11/11 None
F07A5.7.4 ENSEMBL cdna:known chromosome:CEL140:I:7384580:7391314:-1 gene:F07A5.7 11/11 A 
F07A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7384751:7391326:-1 gene:F07A5.7 11/11 A 
F07A5.7.3 ENSEMBL cdna:known chromosome:CEL140:I:7384754:7391314:-1 gene:F07A5.7 11/11 None
F07A5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7385027:7391326:-1 gene:F07A5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7385354-7391143(-) 100.0 100.0
Public Domain and Genome References
Gene Title paramyosin
Gene Symbol unc-15
Ensembl F07A5.7
Entrez Gene 172491 Entrez gene
SwissProt P10567 EMBL-EBI
WormBase CE09197 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628105_A_AT Paramyosin dm
DROSOPHILA_2:1632854_S_AT Paramyosin dm
DROSGENOME1:152555_AT Paramyosin dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01965 Hypothetical protein F07A5.7 [Caenorhabditis elegans] emb|CAA96622.1| Hypothetical protein F07A5.7 [Caenorhabditis elegans] ref|NP_492085.1| F07A5.7 [Caenorhabditis elegans] 0.0
blast CAE66607 Hypothetical protein CBG11932 [Caenorhabditis briggsae] 0.0
blast CAA30857 paramyosin [Caenorhabditis elegans] sp|P10567|MYSP_CAEEL Paramyosin 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.80000019073486
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 3.70000004768372
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 3.0
Pfam IPR002928 EMBL-EBI Myosin tail 1.0E-126
Pfam IPR002928 EMBL-EBI Myosin tail 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190436_AT
tgcccgtgccgttgaacaacttcatgaggaacaagaacactcgatgaaaatcgatgcctt
gagaaagtctcttgaggagcaagtcaagcaactccaagttcaaattcaagaagctgaggc
tgccgctcttctcggaggaaagagagtcatcgccaagttggagaccagaatccgtgatct
tgagaccgctcttgatgaggaaaccagaagacacaaggagacccagaatgccttgagaaa
gaaggatcgccgcatcaaggaggttcaacaactcgttgatgaagagcacaagaacttcgt
tatggctcaagacaccgctgatcgtcttaccgagaagctcaacatccagaagagacaact
tgctgagtccgagtccgtaacaatgcaaaacctccagagagtccgcagataccaacacga
gctcgaggatgctgagggccgtgccgatcaagccgagtccagccttcacctcatccgtgc
caagcatcgttcatctgttgtcaccggaaagtcatcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCGTGCCGTTGAACAACTTCAT 274 583 2082 Antisense
TTCAAGAAGCTGAGGCTGCCGCTCT 218 683 2186 Antisense
AGAATCCGTGATCTTGAGACCGCTC 451 75 2248 Antisense
GATCGCCGCATCAAGGAGGTTCAAC 422 417 2326 Antisense
TTCGTTATGGCTCAAGACACCGCTG 14 691 2377 Antisense
ACCGCTGATCGTCTTACCGAGAAGC 514 81 2395 Antisense
GCTGAGTCCGAGTCCGTAACAATGC 144 295 2443 Antisense
GCAAAACCTCCAGAGAGTCCGCAGA 237 319 2466 Antisense
CGAGCTCGAGGATGCTGAGGGCCGT 375 251 2499 Antisense
CAAGCATCGTTCATCTGTTGTCACC 335 185 2562 Antisense
TGTTGTCACCGGAAAGTCATCCTCC 237 563 2577 Antisense
Sequence Source Affymetrix Proprietary Database