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[190434_s_at] tetraspanin

Description F33C8.3 /REP_DB=WormBase Gene ID /WP=CE05798 /GEN=tsp-8 /TR=Q19983 /GB=CAA93655.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 22      6grp_total > 32      4grp_total > 50      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > 03      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1807
1 2 3 4 range
A 1240.4
(-1.5)
P 		2585.5
(3)
P 		1870.6
(0.6)
P 		779
(-3)
P 		1807
B 1341.5
(-0.9)
P 		2239.5
(3)
P 		1954.4
(1.8)
P 		868.4
(-3)
P 		1371
C 1375.8
(0.4)
P 		1629
(2.3)
P 		1715.9
(3)
P 		935.9
(-3)
P 		780
avr 1319.2
(-0.9) 		2151.3
(3) 		1847
(1.6) 		861.1
(-3) 		1290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1388
1 2 3 4 5 6 range
A 2127.9
(2.9)
P 		2146.8
(3)
P 		2134.8
(2.9)
P 		1877.5
(1.7)
P 		1174.5
(-1.6)
P 		880.9
(-3)
P 		1266
B 1971.2
(2.7)
P 		2025.7
(3)
P 		1952.7
(2.6)
P 		1723.7
(1.4)
P 		1437.8
(-0.1)
P 		903.6
(-3)
P 		1122
C 1971.9
(1.7)
P 		1996.7
(1.8)
P 		2268.4
(3)
P 		1979.3
(1.7)
P 		1266.2
(-1.4)
P 		891.9
(-3)
P 		1377
avr 2023.7
(2.5) 		2056.4
(2.7) 		2118.6
(3) 		1860.2
(1.7) 		1292.8
(-1) 		892.1
(-3) 		1227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 451.6
(1.5)
P 		561.2
(3)
P 		489
(2)
P 		114
(-3)
P 		447
B 427.8
(1)
P 		553.1
(3)
P 		452.9
(1.4)
P 		185
(-3)
P 		368
C 455.4
(1.1)
P 		468.3
(1.2)
P 		598.1
(3)
P 		157.8
(-3)
P 		440
avr 444.9
(1.7) 		527.5
(3) 		513.3
(2.8) 		152.3
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 392.3
(-1.1)
P 		763.5
(3)
P 		464.9
(-0.3)
P 		476.2
(-0.1)
P 		354.4
(-1.5)
P 		214.5
(-3)
P 		549
B 685.9
(3)
P 		674.3
(2.8)
P 		474.2
(-0.6)
P 		456.6
(-0.9)
P 		584.1
(1.2)
P 		337
(-3)
P 		349
C 730.9
(3)
P 		609.2
(1.3)
P 		577.3
(0.9)
P 		398
(-1.6)
P 		409.7
(-1.5)
P 		298.6
(-3)
P 		432
avr 603
(1.8) 		682.3
(3) 		505.5
(0.3) 		443.6
(-0.6) 		449.4
(-0.5) 		283.4
(-3) 		399
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190434_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18045
Sequence Type Exemplar sequence
Representative Public ID F33C8.3 NCBI
Target Description F33C8.3 /REP_DB=WormBase Gene ID /WP=CE05798 /GEN=tsp-8 /TR=Q19983 /GB=CAA93655.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078044 NCBI Caenorhabditis elegans F33C8.3 (tetraspanin) mRNA, complete cds. 11/11 None
GENEFINDER00000025098 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14726145:14728409:-1 10/11 None
SNAP00000025090 ENSEMBL cdna:SNAP chromosome:CEL140:X:14726599:14728427:-1 11/11 None
F33C8.3 ENSEMBL cdna:known chromosome:CEL140:X:14726599:14729368:-1 gene:F33C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14726598-14729351(-) 100.0 100.0
Public Domain and Genome References
Gene Title tetraspanin
Gene Symbol tsp-8
Ensembl F33C8.3
Entrez Gene 181567 Entrez gene
SwissProt Q19983 EMBL-EBI
WormBase CE05798 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631105_AT Tetraspanin 96F dm
DROSGENOME1:153954_AT Tetraspanin 96F dm
CHICKEN:GGAAFFX.12050.1.S1_S_AT CD82 antigen gga
HG-U133A:203904_X_AT CD82 antigen hs
HG-U133_PLUS_2:203904_X_AT CD82 antigen hs
HG-FOCUS:203904_X_AT CD82 antigen hs
HG-U133A_2:203904_X_AT CD82 antigen hs
HU35KSUBA:HUM_ALU_AT CD82 antigen hs
HU35KSUBB:HUM_ALU_AT CD82 antigen hs
HU35KSUBC:HUM_ALU_AT CD82 antigen hs
HU35KSUBD:HUM_ALU_AT CD82 antigen hs
HUGENEFL:HUM_ALU_AT CD82 antigen hs
HC-G110:HUM_ALU_AT CD82 antigen hs
HU35KSUBC:RC_AA047296_S_AT CD82 antigen hs
U133_X3P:G13259537_3P_X_AT CD82 antigen hs
U133_X3P:G13259537_3P_AT CD82 antigen hs
HG-U133_PLUS_2:228910_AT CD82 antigen hs
HG-U133B:228910_AT CD82 antigen hs
HG-U95E:75742_AT CD82 antigen hs
U133_X3P:HS.164261.0.A1_3P_AT CD82 antigen hs
MG-U74AV2:99585_AT CD82 antigen mm
MOUSE430_2:1449611_AT CD82 antigen mm
MOUSE430A_2:1449611_AT CD82 antigen mm
MOE430A:1449611_AT CD82 antigen mm
MU11KSUBA:D14883_S_AT CD82 antigen mm
MG-U74AV2:99584_AT CD82 antigen mm
MG-U74AV2:161861_I_AT CD82 antigen mm
MG-U74CV2:171135_AT CD82 antigen mm
MG-U74CV2:170027_AT CD82 antigen mm
MOE430A:1416401_AT CD82 antigen mm
MOUSE430A_2:1416401_AT CD82 antigen mm
MOUSE430_2:1416401_AT CD82 antigen mm
MU11KSUBB:MSA.14639.0_S_AT CD82 antigen (Cd82), mRNA mm
MU19KSUBC:TC36301_AT CD82 antigen (Cd82), mRNA mm
MU19KSUBC:TC36302_S_AT CD82 antigen (Cd82), mRNA mm
RG-U34A:RC_AI231213_AT kangai 1 rn
RG-U34A:RC_AI231213_G_AT kangai 1 rn
RG-U34C:AA850259_S_AT kangai 1 rn
RAE230A:1386976_AT kangai 1 rn
RAT230_2:1386976_AT kangai 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93655 Hypothetical protein F33C8.3 [Caenorhabditis elegans] ref|NP_510445.1| F33C8.3 [Caenorhabditis elegans] 1.0E-134
blast CAE63220 Hypothetical protein CBG07578 [Caenorhabditis briggsae] 1.0E-128
blast CAA93655 Hypothetical protein F33C8.3 [Caenorhabditis elegans] ref|NP_510445.1| F33C8.3 [Caenorhabditis elegans] 1.0E-122
blast CAE63220 Hypothetical protein CBG07578 [Caenorhabditis briggsae] 1.0E-116
blast CAA93655 Hypothetical protein F33C8.3 [Caenorhabditis elegans] ref|NP_510445.1| F33C8.3 [Caenorhabditis elegans] 1.0E-115
blast CAE63220 Hypothetical protein CBG07578 [Caenorhabditis briggsae] 1.0E-112
blast NP_001029404 CD53 antigen [Bos taurus] gb|AAX46421.1| CD53 antigen [Bos taurus] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.1E-73
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 3.0E-59
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 4.2E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510445.1 4 13-35,55-77,84-106,251-273
F33C8.3 4 13-35,55-77,84-106,251-273
GENEFINDER00000025098 3 3-25,35-57,64-86
SNAP00000025090 4 2-21,41-63,70-92,237-259
Sequence
Target Sequence 
>C. ELEGANS:190434_S_AT
ttctgctgcatattgatcctcgcgtttttcctcgaactcgcagctgctgtcacacttttc
cacaaacaagaacacatcaaacactatgtggagagcagtatgtacgacactatcagaaat
cgctactcgtcggagacggctttcaaagatgcatttgacacggttcaagagaaattcgaa
tgctgtggtgtgaaaacatacacggactggcttagcgcaagatgggacgccgagccatcc
actcaattagaagtgaacgaagaagatgctggcagaattgagcacggaattggcgcgttc
ggcgggaacaaaggcactggatatggtcgagtcccatcatcttgctgtaatgagcatgga
aagctttcctacccaaataactgtggaagatcattcagccaagctccgctcaacacttat
gctcaatttatcaatacacggggatgcgccgatgccgtgtacgaaagcgtgagcagctca
ttgagcttgatagtaggagtttgtgtggttctttgcattgttcaactccttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCTGCATATTGATCCTCGCGT 488 691 277 Antisense
AATCGCTACTCGTCGGAGACGGCTT 393 167 394 Antisense
ACATACACGGACTGGCTTAGCGCAA 303 101 472 Antisense
GCCGAGCCATCCACTCAATTAGAAG 244 285 505 Antisense
TTGAGCACGGAATTGGCGCGTTCGG 357 701 554 Antisense
ATATGGTCGAGTCCCATCATCTTGC 642 21 597 Antisense
AAGCTTTCCTACCCAAATAACTGTG 118 149 637 Antisense
GGAAGATCATTCAGCCAAGCTCCGC 4 533 661 Antisense
TCCGCTCAACACTTATGCTCAATTT 9 597 681 Antisense
CACGGGGATGCGCCGATGCCGTGTA 583 199 713 Antisense
TCTTTGCATTGTTCAACTCCTTGGA 599 615 786 Antisense
Sequence Source Affymetrix Proprietary Database