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[190433_s_at]

Description C08H9.3 /REP_DB=WormBase Gene ID /WP=CE02989 /TR=SW:P52887 /GB=CAA91145.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucosyltransferase
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      6grp_highest_nonorm > 91      6grp_total > 78      4grp_total > 26      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 128.9
(-1.3)
P 		194.6
(3)
M 		102.6
(-3)
A 		133.3
(-1)
P 		92
B 129.4
(-3)
P 		158.6
(2.1)
M 		164
(3)
M 		135.5
(-1.9)
P 		35
C 132.7
(-1.6)
P 		107.8
(-3)
A 		156.7
(-0.3)
A 		217.5
(3)
P 		110
avr 130.3
(-3) 		153.7
(1.4) 		141.1
(-1) 		162.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 184.4
(-1.6)
P 		186.8
(-1.5)
P 		158.8
(-3)
P 		194.4
(-1.1)
P 		239.3
(1.3)
P 		270.4
(3)
P 		112
B 223.5
(-1.3)
P 		203.2
(-2.3)
P 		189.2
(-3)
P 		203.6
(-2.3)
P 		236
(-0.7)
P 		309.9
(3)
P 		121
C 193.9
(-1.4)
P 		207.3
(-1)
P 		139.2
(-3)
P 		172.5
(-2)
P 		252.2
(0.3)
P 		345.3
(3)
P 		206
avr 200.6
(-1.4) 		199.1
(-1.5) 		162.4
(-3) 		190.2
(-1.9) 		242.5
(0.3) 		308.5
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 46.9
(3)
P 		42.2
(2)
M 		26.8
(-1.4)
A 		19.5
(-3)
P 		27
B 41.3
(3)
P 		39.2
(2)
M 		38
(1.4)
M 		28.9
(-3)
P 		12
C 43.9
(0.3)
P 		31
(-3)
A 		54.6
(3)
A 		36.7
(-1.6)
P 		24
avr 44
(3) 		37.5
(0.5) 		39.8
(1.4) 		28.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 34
(-3)
P 		66.4
(2.1)
P 		34.6
(-2.9)
P 		49.3
(-0.6)
P 		72.2
(3)
P 		65.8
(2)
P 		38
B 77.8
(-0.3)
P 		67.6
(-1.1)
P 		45.9
(-3)
P 		53.9
(-2.3)
P 		95.9
(1.3)
P 		115.6
(3)
P 		70
C 71.9
(-0.2)
P 		63.3
(-0.9)
P 		35.4
(-2.9)
P 		34.7
(-3)
P 		81.6
(0.5)
P 		115.6
(3)
P 		81
avr 61.2
(-0.8) 		65.8
(-0.3) 		38.6
(-3) 		46
(-2.3) 		83.2
(1.4) 		99
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190433_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3553
Sequence Type Exemplar sequence
Representative Public ID C08H9.3 NCBI
Target Description C08H9.3 /REP_DB=WormBase Gene ID /WP=CE02989 /TR=SW:P52887 /GB=CAA91145.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026769 NCBI Caenorhabditis elegans C08H9.3a (glucosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000001379 ENSEMBL cdna:SNAP chromosome:CEL140:II:9882759:9885258:-1 11/11 None
GENEFINDER00000001385 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9882759:9886349:-1 11/11 None
C08H9.3a ENSEMBL cdna:known chromosome:CEL140:II:9882652:9886353:-1 gene:C08H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174542 2 1 NM_001026769 190433_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9882755-9886346(-) 100.0 100.0
Public Domain and Genome References
Ensembl C08H9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91145 Hypothetical protein C08H9.3a [Caenorhabditis elegans] ref|NP_001021940.1| C08H9.3a [Caenorhabditis elegans] sp|P52887|ALG8_CAEEL Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase) 0.0
blast CAE57940 Hypothetical protein CBG00995 [Caenorhabditis briggsae] 0.0
blast CAE57940 Hypothetical protein CBG00995 [Caenorhabditis briggsae] 1.0E-151
blast AAH70861 MGC84618 protein [Xenopus laevis] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR007581 EMBL-EBI Endonuclease V 7.1E-15
Pfam IPR004856 EMBL-EBI ALG6, ALG8 glycosyltransferase 2.1E-31
Pfam IPR007581 EMBL-EBI Endonuclease V 7.1E-15
Pfam IPR004856 EMBL-EBI ALG6, ALG8 glycosyltransferase 3.6E-50
Pfam IPR007581 EMBL-EBI Endonuclease V 7.1E-15
Pfam IPR004856 EMBL-EBI ALG6, ALG8 glycosyltransferase 1.9E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021940.1 11 7-26,64-86,98-120,157-176,197-214,229-251,322-344,354-371,392-414,418-435,476-498
C08H9.3a 11 7-26,64-86,98-120,157-176,197-214,229-251,322-344,354-371,392-414,418-435,476-498
SNAP00000001379 5 21-43,58-80,149-171,186-208,215-237
GENEFINDER00000001385 9 7-26,77-96,117-134,149-171,242-264,274-291,312-334,338-355,396-418
Sequence
Target Sequence 
>C. ELEGANS:190433_S_AT
acacgtggcaaccatttctgacaccaggatgctcgaactaccgtatatcccacaatactt
ggcagttagagaagcagaagttatggctgatttcctgaaaagtgtgatcacagagcgtcc
agagctccgaccggatgtgattttgtgtgacggatttggagagtttcattcaagaggttg
tggaatggcttgtcacgtgggagctctttccggaattgccagcattggtgttgccaaaaa
tttgactcttcaccacacttatgaaactattggcatggaaaacaaatcgaaagttgacag
ttttgtggaacattgccgagaggtctataaaaacaataaaacatcgcctggatttatccc
atttgatatcgttgagccggtggtgttgaacattctaagaatgggtagttcaatgaacgg
agtattcgtctctgcgggttacggtatcgacttggaactgtccactgaaatttgctcaca
acttttgctcaacaacacgacgattgagccaattcgagctgccgatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACGTGGCAACCATTTCTGACACC 641 107 1479 Antisense
ACACCAGGATGCTCGAACTACCGTA 394 103 1499 Antisense
ATCACAGAGCGTCCAGAGCTCCGAC 360 27 1585 Antisense
GCTCCGACCGGATGTGATTTTGTGT 613 297 1602 Antisense
AATGGCTTGTCACGTGGGAGCTCTT 691 161 1662 Antisense
AGCTCTTTCCGGAATTGCCAGCATT 465 79 1680 Antisense
AAATTTGACTCTTCACCACACTTAT 223 117 1716 Antisense
AACATCGCCTGGATTTATCCCATTT 608 137 1818 Antisense
GTCTCTGCGGGTTACGGTATCGACT 296 471 1906 Antisense
ATTTGCTCACAACTTTTGCTCAACA 624 17 1948 Antisense
TGAGCCAATTCGAGCTGCCGATCTA 275 569 1983 Antisense
Sequence Source Affymetrix Proprietary Database