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[190432_at] GTP binding protein

Description R07B1.8 /REP_DB=WormBase Gene ID /WP=CE01634 /TR=SW:Q09608 /GB=CAA88545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GTP binding protein
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 49      6grp_cgc > 01      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 125.6
(-3)
P 		214.4
(2.5)
P 		222
(3)
P 		134
(-2.5)
P 		96
B 152
(-2.3)
P 		238.1
(3)
P 		185.6
(-0.2)
P 		139.9
(-3)
P 		98
C 129.6
(-3)
P 		195.2
(3)
P 		193.5
(2.8)
P 		191.8
(2.7)
P 		66
avr 135.7
(-3) 		215.9
(3) 		200.4
(1.8) 		155.2
(-1.5) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 243.2
(3)
P 		134.8
(-0.4)
P 		53
(-3)
P 		133.9
(-0.4)
P 		141.2
(-0.2)
P 		135.8
(-0.4)
P 		190
B 261.5
(3)
P 		146.5
(-0.9)
P 		85.9
(-3)
P 		118.3
(-1.9)
P 		135.7
(-1.3)
P 		91.3
(-2.8)
P 		176
C 182.5
(3)
P 		130.6
(-1.1)
P 		112.3
(-2.6)
P 		137.1
(-0.6)
P 		146.9
(0.2)
P 		107.3
(-3)
P 		75
avr 229.1
(3) 		137.3
(-0.8) 		83.7
(-3) 		129.8
(-1.1) 		141.3
(-0.6) 		111.5
(-1.9) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 45.7
(1.1)
P 		46.5
(1.2)
P 		58
(3)
P 		19.6
(-3)
P 		38
B 48.5
(0.9)
P 		58.8
(3)
P 		43
(-0.3)
P 		29.8
(-3)
P 		29
C 42.9
(-1.2)
P 		56.1
(1.1)
P 		67.4
(3)
P 		32.3
(-3)
P 		35
avr 45.7
(0.8) 		53.8
(2.5) 		56.1
(3) 		27.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 44.8
(2.5)
P 		47.9
(3)
P 		11.5
(-3)
P 		34
(0.7)
P 		42.6
(2.1)
P 		33.1
(0.6)
P 		36
B 91
(3)
P 		48.7
(-0.6)
P 		20.9
(-3)
P 		31.3
(-2.1)
P 		55.1
(-0.1)
P 		34.1
(-1.9)
P 		70
C 67.6
(3)
P 		39.9
(-1.2)
P 		28.6
(-2.9)
P 		27.6
(-3)
P 		47.5
(-0)
P 		35.9
(-1.8)
P 		40
avr 67.8
(3) 		45.5
(0.2) 		20.3
(-3) 		31
(-1.6) 		48.4
(0.5) 		34.4
(-1.2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16229
Sequence Type Exemplar sequence
Representative Public ID R07B1.8 NCBI
Target Description R07B1.8 /REP_DB=WormBase Gene ID /WP=CE01634 /TR=SW:Q09608 /GB=CAA88545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GTP binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077255 NCBI Caenorhabditis elegans Gut granule LOss family member (glo-1) (glo-1) mRNA, complete cds. 11/11 None
GENEFINDER00000020701 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9870817:9872530:-1 11/11 None
SNAP00000020695 ENSEMBL cdna:SNAP chromosome:CEL140:X:9870939:9872530:-1 9/11 None
R07B1.8 ENSEMBL cdna:known chromosome:CEL140:X:9870817:9874548:-1 gene:R07B1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9870816-9874548(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP binding protein
Ensembl R07B1.8
Entrez Gene 187649 Entrez gene
WormBase CE38626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88545 Hypothetical protein R07B1.8 [Caenorhabditis elegans] ref|NP_509656.2| Gut granule LOss family member (glo-1) [Caenorhabditis elegans] 0.0
blast Q09608 Hypothetical protein R07B1.8 in chromosome X 0.0
blast CAE58726 Hypothetical protein CBG01911 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.4E-7
Sequence
Target Sequence 
>C. ELEGANS:190432_AT
ttacatgttaccgtcaagcactagacttgaattcggaatatatacagttgatctacaatc
gggattatgctttgagagcttgcatacaaaatttacgccaacaaagtgtctgtcgaatga
acgacaaatctcggcttcgatcttgtttgtgcggtgttcgagagcaatacgataatgatg
tacaagctggaattctgcagtgtgttaaatcgaaaagcccacacattcctgcaatggtca
ttgaaatgagcagcagtttagacgaggaaccaacatccgccaagattcaggagcaagtta
ctcctgcgcaactgacattcgatacccctggtgcaattgttaatgggcaatgtatgtgtg
cttgtgaacattccgcaaaaaatgaagcaacacgtctttttgcgaataaaaagaacaaca
atgatgtagaaaaatcaactcaaatcgagaaaaaacctgaaaagcaagggcctgaaattc
aagaagaagtagttgaaatggaaactgtgaaagacgagcaaccaccgaaaacaagtgctg
ttcgatttaaagagaattctccgcgtctaatgcaacccagtgaagctgccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACATGTTACCGTCAAGCACTAGA 357 683 1169 Antisense
GAACGACAAATCTCGGCTTCGATCT 649 345 1287 Antisense
GCTTCGATCTTGTTTGTGCGGTGTT 154 307 1302 Antisense
AAATCGAAAAGCCCACACATTCCTG 374 117 1375 Antisense
CCCACACATTCCTGCAATGGTCATT 399 257 1386 Antisense
TAGACGAGGAACCAACATCCGCCAA 451 651 1427 Antisense
ACTCCTGCGCAACTGACATTCGATA 522 99 1468 Antisense
ACATTCGATACCCCTGGTGCAATTG 279 105 1483 Antisense
GTGTGCTTGTGAACATTCCGCAAAA 708 487 1524 Antisense
AAAGAGAATTCTCCGCGTCTAATGC 383 123 1717 Antisense
AATGCAACCCAGTGAAGCTGCCGGT 509 153 1737 Antisense
Sequence Source Affymetrix Proprietary Database