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[190431_at] ATP binding protein

Description F10B5.5 /REP_DB=WormBase Gene ID /WP=CE01547 /TR=SW:Q09535 /GB=CAA88312.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP binding protein
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 0      6grp_total > 97      4grp_total > 07      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 133
(1.6)
P 		81.3
(-3)
P 		110.2
(-0.4)
M 		149.1
(3)
P 		68
B 120.4
(-1.8)
P 		116.8
(-3)
A 		134.6
(3)
M 		130.9
(1.8)
P 		18
C 176.4
(2.7)
P 		80.1
(-3)
A 		149
(1.1)
P 		181.2
(3)
P 		101
avr 143.3
(2) 		92.7
(-3) 		131.3
(0.8) 		153.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 195.7
(-1.3)
P 		76.9
(-3)
P 		130.6
(-2.2)
P 		244.7
(-0.6)
P 		420
(1.8)
P 		501.8
(3)
P 		425
B 151.5
(-2.5)
P 		116.8
(-3)
A 		177.9
(-2.2)
P 		225.3
(-1.6)
P 		543.9
(2.7)
P 		567.2
(3)
P 		450
C 100.4
(-3)
P 		121.3
(-2.8)
P 		123.9
(-2.7)
P 		246.4
(-1.4)
P 		327.2
(-0.5)
P 		638.5
(3)
P 		538
avr 149.2
(-2.4) 		105
(-3) 		144.1
(-2.5) 		238.8
(-1.3) 		430.4
(1.2) 		569.2
(3) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 48.4
(3)
P 		17.6
(-3)
P 		28.8
(-0.8)
M 		21.8
(-2.2)
P 		31
B 38.4
(3)
P 		28.9
(-2.4)
A 		31.2
(-1.1)
M 		27.9
(-3)
P 		11
C 58.4
(3)
P 		23
(-3)
A 		51.9
(1.9)
P 		30.5
(-1.7)
P 		35
avr 48.4
(3) 		23.2
(-3) 		37.3
(0.4) 		26.7
(-2.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 36.1
(-2.5)
P 		27.3
(-3)
P 		28.4
(-2.9)
P 		62.1
(-0.9)
P 		126.8
(3)
P 		122.2
(2.7)
P 		100
B 52.7
(-2.5)
P 		38.9
(-3)
A 		43.2
(-2.9)
P 		59.7
(-2.3)
P 		221
(3)
P 		211.5
(2.7)
P 		182
C 37.2
(-2.8)
P 		37
(-2.8)
P 		31.5
(-3)
P 		49.5
(-2.4)
P 		105.9
(-0.6)
P 		213.8
(3)
P 		182
avr 42
(-2.7) 		34.4
(-3) 		34.4
(-3) 		57.1
(-2.1) 		151.2
(1.7) 		182.5
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3853
Sequence Type Exemplar sequence
Representative Public ID F10B5.5 NCBI
Target Description F10B5.5 /REP_DB=WormBase Gene ID /WP=CE01547 /TR=SW:Q09535 /GB=CAA88312.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063310 NCBI Caenorhabditis elegans Pachytene CHeckpoint protein (yeast PCH homolog) family member (pch-2) (pch-2) mRNA, complete cds. 11/11 None
SNAP00000014818 ENSEMBL cdna:SNAP chromosome:CEL140:II:8158065:8159752:1 11/11 None
GENEFINDER00000014821 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8158278:8159752:1 11/11 None
F10B5.5 ENSEMBL cdna:known chromosome:CEL140:II:8158270:8159752:1 gene:F10B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8158274-8159749(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP binding protein
Gene Symbol pch-2
Ensembl F10B5.5
Entrez Gene 174313 Entrez gene
SwissProt Q09535 EMBL-EBI
WormBase CE01547 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88312 Hypothetical protein F10B5.5 [Caenorhabditis elegans] ref|NP_495711.1| Pachytene CHeckpoint protein (yeast PCH homolog) family member (pch-2) [Caenorhabditis elegans] sp|Q09535|PCH2_CAEEL Putative pachytene checkpoint protein 0.0
blast CAE57722 Hypothetical protein CBG00732 [Caenorhabditis briggsae] 1.0E-162
blast CAE57722 Hypothetical protein CBG00732 [Caenorhabditis briggsae] 1.0E-156
blast AAH56713 Hypothetical protein LOC393554 [Danio rerio] ref|NP_956876.1| hypothetical protein LOC393554 [Danio rerio] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.6E-44
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.6E-44
Sequence
Target Sequence 
>C. ELEGANS:190431_AT
gtgcatggtttttgttcttatcgacgaggttgaatcgctcggaatgtgtcgtgaatcctc
atcatctcgttctgaaccatcggacgccattcgagcagtcaacgcccttctcactcaaat
tgatagaatcaggagacgtgataacgtacttattctgtgtacgtcgaacctggaatcaac
tctggataaagctctcgttgatcgagccgacattgtaaaaaatgtcgggcagccttcgga
ctttgcacgatattctatgctgaaatcatcaattatggaattggcccggattggtgttgt
tattgataatgaagttcacactgattattggccacaagatatttgtgatacgaaagcacc
aagaaatgagtttaccgagattctttttaaaatcgcccaagaagcgcgtggactctctgg
acgagcaatatccatgcttcctacactggtttattcaaaaagtccggaagaaactatcac
actgccgaattgcatgaatctctttctcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATGGTTTTTGTTCTTATCGAC 294 481 744 Antisense
GAATGTGTCGTGAATCCTCATCATC 652 331 785 Antisense
CATCTCGTTCTGAACCATCGGACGC 32 213 806 Antisense
TCGGACGCCATTCGAGCAGTCAACG 30 607 823 Antisense
GTACGTCGAACCTGGAATCAACTCT 430 457 902 Antisense
AAGCTCTCGTTGATCGAGCCGACAT 474 149 932 Antisense
AAATGTCGGGCAGCCTTCGGACTTT 628 113 963 Antisense
GAATTGGCCCGGATTGGTGTTGTTA 701 321 1021 Antisense
ATATCCATGCTTCCTACACTGGTTT 286 21 1171 Antisense
GAAACTATCACACTGCCGAATTGCA 373 355 1213 Antisense
GAATTGCATGAATCTCTTTCTCGAG 39 325 1230 Antisense
Sequence Source Affymetrix Proprietary Database